View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_high_1 (Length: 503)
Name: NF0257_high_1
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_high_1
Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 32 - 383
Target Start/End: Original strand, 10887417 - 10887768
Alignment:
Q
32
agactcgaggtgcttagtgcagcgtactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtttcctcaac
131
Q
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10887417
agactcaaggtgcttagtgcaacgaactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtttcctcaac
10887516
T
Q
132
tgaccacaatgcgcctaataaaattgccaaggctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgtatgcacatca
231
Q
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
T
10887517
tgaccacaatgcacctaataaacttgccaaggctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgcatgcacatcc
10887616
T
Q
232
ttgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattgaaaaggtacttcatacaacttggtctatcaggcag
331
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
T
10887617
ttgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattgaaaaggtacttcatacaacttggtgtataaggcag
10887716
T
Q
332
ttaaaaacagtttcacgtgccccagataataatacaaagtatacctaaccta
383
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10887717
ttaaaaacagtttcacgtgccccagataataatacaaagtatacctaaccta
10887768
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 378 - 495
Target Start/End: Original strand, 10887786 - 10887903
Alignment:
Q
378
aacctataaatgtatctatcactggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcact
477
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10887786
aacctataaatgtatctatcactggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcact
10887885
T
Q
478
atccaatgcttctctgct
495
Q
||||||| ||||| ||||
T
10887886
atccaattcttctatgct
10887903
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 69 - 304
Target Start/End: Original strand, 10855296 - 10855537
Alignment:
Q
69
tggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtt------tcctcaactgaccacaatgcgcctaataaaattgccaag
162
Q
|||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||| |||||| || || | ||||||||||||||
T
10855296
tggtagaaatattttcagaggatgaaatacctgcagaaggagcaacaaaagagttaatgtttccttctctgacctcattgtacataataaaattgccagc
10855395
T
Q
163
gctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgtatgcacatcattgtaacttgacgatactcaaatgtcgagaa
262
Q
||||||||||||||||| | || ||||||||||||||||||| |||||||| || ||||| ||| |||||||| ||||||| |||||| ||||
T
10855396
gctcaaatacttttatcgtggtttacataagctagaatggcccatgctaaaagaattgcatgcatatcggtgtaacttagtgatactcgaatgtcaagaa
10855495
T
Q
263
gatcatccagaggaccaagcccttattccaattgaaaaggta
304
Q
|||||||||||||| ||||||||| ||||| |||||||||||
T
10855496
gatcatccagaggagcaagcccttgttccagttgaaaaggta
10855537
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 482
Target Start/End: Original strand, 10855881 - 10855948
Alignment:
Q
415
tttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcactatcca
482
Q
|||||||| ||| ||||||||||||||||| ||| ||||||||||||||||| |||| ||| ||||||
T
10855881
tttttatttaatggatgatatttaaacaattaatctaattcctaaagctcataagtcatcaatatcca
10855948
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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