View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0257_high_1 (Length: 503)
Name: NF0257_high_1
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0257_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 32 - 383
Target Start/End: Original strand, 10887417 - 10887768
Alignment:
| Q |
32 |
agactcgaggtgcttagtgcagcgtactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtttcctcaac |
131 |
Q |
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| T |
10887417 |
agactcaaggtgcttagtgcaacgaactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtttcctcaac |
10887516 |
T |
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| Q |
132 |
tgaccacaatgcgcctaataaaattgccaaggctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgtatgcacatca |
231 |
Q |
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| T |
10887517 |
tgaccacaatgcacctaataaacttgccaaggctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgcatgcacatcc |
10887616 |
T |
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| Q |
232 |
ttgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattgaaaaggtacttcatacaacttggtctatcaggcag |
331 |
Q |
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| T |
10887617 |
ttgtaacttgacgatactcaaatgtcgagaagatcatccagaggaccaagcccttattccaattgaaaaggtacttcatacaacttggtgtataaggcag |
10887716 |
T |
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| Q |
332 |
ttaaaaacagtttcacgtgccccagataataatacaaagtatacctaaccta |
383 |
Q |
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| T |
10887717 |
ttaaaaacagtttcacgtgccccagataataatacaaagtatacctaaccta |
10887768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 378 - 495
Target Start/End: Original strand, 10887786 - 10887903
Alignment:
| Q |
378 |
aacctataaatgtatctatcactggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcact |
477 |
Q |
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| T |
10887786 |
aacctataaatgtatctatcactggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcact |
10887885 |
T |
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| Q |
478 |
atccaatgcttctctgct |
495 |
Q |
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| T |
10887886 |
atccaattcttctatgct |
10887903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 69 - 304
Target Start/End: Original strand, 10855296 - 10855537
Alignment:
| Q |
69 |
tggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtt------tcctcaactgaccacaatgcgcctaataaaattgccaag |
162 |
Q |
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| T |
10855296 |
tggtagaaatattttcagaggatgaaatacctgcagaaggagcaacaaaagagttaatgtttccttctctgacctcattgtacataataaaattgccagc |
10855395 |
T |
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| Q |
163 |
gctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgtatgcacatcattgtaacttgacgatactcaaatgtcgagaa |
262 |
Q |
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| T |
10855396 |
gctcaaatacttttatcgtggtttacataagctagaatggcccatgctaaaagaattgcatgcatatcggtgtaacttagtgatactcgaatgtcaagaa |
10855495 |
T |
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| Q |
263 |
gatcatccagaggaccaagcccttattccaattgaaaaggta |
304 |
Q |
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| T |
10855496 |
gatcatccagaggagcaagcccttgttccagttgaaaaggta |
10855537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 482
Target Start/End: Original strand, 10855881 - 10855948
Alignment:
| Q |
415 |
tttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcactatcca |
482 |
Q |
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| T |
10855881 |
tttttatttaatggatgatatttaaacaattaatctaattcctaaagctcataagtcatcaatatcca |
10855948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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