View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_high_12 (Length: 249)
Name: NF0257_high_12
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_high_12
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10441260 - 10441021
Alignment:
Q
1
atcacagcaatacaacaacatcagccaagccttattaactcccccacacagggtgagatgcttctgagcaataaatcagaaatatttcatcacatgctta
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10441260
atcacagcaatacaacaacatcagccaagccttattaactcccccacacagggtgagatgcttctgagcaataaatcagaaatatttcatcacatgctta
10441161
T
Q
101
tttctcttattaacaatagactgcaaatcagttaaataatgataatatagttaccttaatgtcacttcctcggaaaagaatgcattcataaaccttgtca
200
Q
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10441160
tttctcttattaacaatagtctgcaaatcagttaaataatgataatatagttaccttaatgtcacttcctcggaaaagaatgcattcataaaccttgtca
10441061
T
Q
201
cttggaggtacttgttgaccatcttttcttctcctctctg
240
Q
|||||||||||||||||||||||||||||||||| |||||
T
10441060
cttggaggtacttgttgaccatcttttcttctcccctctg
10441021
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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