View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0257_high_6 (Length: 319)

Name: NF0257_high_6
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0257_high_6
NF0257_high_6
[»] chr8 (4 HSPs)
chr8 (1-245)||(27054347-27054591)
chr8 (29-176)||(20762726-20762871)
chr8 (173-275)||(20762905-20763007)
chr8 (85-159)||(3424305-3424379)
[»] chr5 (4 HSPs)
chr5 (12-175)||(37247583-37247747)
chr5 (23-290)||(6887902-6888156)
chr5 (104-176)||(27582387-27582459)
chr5 (23-77)||(43299361-43299415)
[»] chr4 (7 HSPs)
chr4 (23-176)||(21315514-21315668)
chr4 (45-176)||(46824607-46824739)
chr4 (85-176)||(16962240-16962331)
chr4 (171-291)||(46824771-46824894)
chr4 (102-152)||(4848643-4848694)
chr4 (173-259)||(21315702-21315788)
chr4 (89-152)||(5198998-5199062)
[»] chr2 (2 HSPs)
chr2 (23-170)||(11445459-11445607)
chr2 (23-155)||(42237508-42237642)
[»] chr7 (2 HSPs)
chr7 (1-175)||(6218196-6218374)
chr7 (184-288)||(6218006-6218109)
[»] scaffold0006 (2 HSPs)
scaffold0006 (23-176)||(75529-75680)
scaffold0006 (173-285)||(75383-75495)
[»] chr1 (10 HSPs)
chr1 (94-175)||(29112532-29112613)
chr1 (46-176)||(24908991-24909112)
chr1 (23-126)||(24909123-24909227)
chr1 (1-123)||(43579048-43579171)
chr1 (205-289)||(43578832-43578916)
chr1 (185-291)||(24908850-24908955)
chr1 (173-237)||(29112441-29112505)
chr1 (33-98)||(32617528-32617594)
chr1 (23-74)||(29112616-29112667)
chr1 (140-174)||(43579012-43579046)
[»] chr6 (7 HSPs)
chr6 (173-291)||(1229342-1229460)
chr6 (17-155)||(2718757-2718898)
chr6 (124-172)||(1229260-1229308)
chr6 (85-150)||(6134223-6134289)
chr6 (87-160)||(2721825-2721899)
chr6 (45-154)||(3234526-3234633)
chr6 (45-117)||(9771917-9771990)
[»] chr3 (1 HSPs)
chr3 (1-99)||(29349962-29350060)
[»] scaffold0526 (1 HSPs)
scaffold0526 (23-149)||(3335-3463)
[»] scaffold0191 (1 HSPs)
scaffold0191 (254-289)||(30707-30742)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 27054347 - 27054591
Alignment:
Q  1 taaataacggccgcggtcatgctaaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgtaattaatcacaacaat 100  Q
    ||||||| || ||||||||   ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27054347 taaataatggtcgcggtcacattaaagttgtcgcgatttcggtcgttacagatgttgcgttatagattgcggtcatcgcggtgtaattaatcacaacaat 27054446  T
Q  101 ccacaaatattattaaatcatttattctatcatataatgtataataacttaaattgaactattattttatatattacaacactatacaacacgaaaatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27054447 ccacaaatattattaaatcatttattctatcatataatgtataataacttaaattgaactattattttatatattacaacactatacaacacgaaaatag 27054546  T
Q  201 acgatgaaaggaacatgagatactattgactcatcacgatctcct 245  Q
    | ||||||||||| ||||||||||||||||||||||| |||||||    
T  27054547 atgatgaaaggaatatgagatactattgactcatcacaatctcct 27054591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 20762726 - 20762871
Alignment:
Q  29 tgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaatcatttattc 127  Q
    |||||||||||||   ||||||||||||||||||  |||||||||| ||||||||| ||||||||| |||||| ||||||||| ||| |||| |||||||    
T  20762726 tgtcgcgatttcggctgttacggatgttgcgttactgattgcggtcgtcgcggtgtgaattaatcagaacaatgcacaaatatcatttaatcttttattc 20762825  T
Q  128 tatcatataatgtataataacttaaattgaactattattttatatatta 176  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  20762826 tatcatatagtgtataataa---aaattgaactattattttatatatta 20762871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 275
Target Start/End: Original strand, 20762905 - 20763007
Alignment:
Q  173 attacaacactatacaacacgaaaatagacgatgaaaggaacatgagatactattgactcatcacgatctcctattgtctattttttcttatgaacggtg 272  Q
    |||||||||| |||||||| |||||||| |||||||| ||| ||||||||||||   ||||||||  ||||  ||| ||||||||| |||||||||||||    
T  20762905 attacaacaccatacaacatgaaaataggcgatgaaatgaatatgagatactatcagctcatcacagtctctcattatctatttttccttatgaacggtg 20763004  T
Q  273 ttg 275  Q
    |||    
T  20763005 ttg 20763007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 3424305 - 3424379
Alignment:
Q  85 aattaatcacaacaatccacaaatattattaaa-tcatttattctatcatataatgtataataacttaaattgaac 159  Q
    |||||||||||||||| ||||| |||||| ||| | |||||| |||||||||||||||||||||||||||||||||    
T  3424305 aattaatcacaacaatgcacaa-tattataaaaattatttatactatcatataatgtataataacttaaattgaac 3424379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 37247747 - 37247583
Alignment:
Q  12 cgcggtcatgctaaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatat 110  Q
    |||||||| | ||||||||| ||||||||||  |||||||||||||||||| |||||| |||  ||||||||| |||||||||||||||| |||||||||    
T  37247747 cgcggtcacgttaaggttgttgcgatttcgagtgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaaatat 37247648  T
Q  111 tattaaatcatttattctatcatataatgtataataacttaaattgaactattattttatatatt 175  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  37247647 tattaaatcatttattctatcatatagtgtataataacttaatttgaactattattttatatatt 37247583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 6887902 - 6888156
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaatcat 121  Q
    |||||||||||||||||||   |||||||||||||| |||  ||||||| || ||||||||| |||| ||||||||||| |||||||||| |||||||||    
T  6887902 taaggttgtcgcgatttcggctgttacggatgttgctttactgattgcgatcttcgcggtgtgaattgatcacaacaatgcacaaatattcttaaatcat 6888001  T
Q  122 ttattctatcatataatgtataataacttaaattgaactattattttatatattacaacactatacaacacgaaaatagacgatgaaaggaacatgagat 221  Q
    ||||||||||  ||| ||||||||||||||||||  |            | ||||||||||||||||| |||||||||| |||||| || || |||||||    
T  6888002 ttattctatc--atagtgtataataacttaaattaca------------acattacaacactatacaatacgaaaataggcgatgagagcaatatgagat 6888087  T
Q  222 actattgactcatcacgatctcctattgtctattttttcttatgaacggtgttgtgtttttcgcttccg 290  Q
    | ||||| ||||||||  ||||  ||| || |||||| |||||||||||||||||||||||| ||||||    
T  6888088 attattggctcatcacagtctctcattatccatttttccttatgaacggtgttgtgtttttcacttccg 6888156  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 27582387 - 27582459
Alignment:
Q  104 caaatattatt-aaatcatttattctatcatataatgtataataacttaaattgaactattattttatatatta 176  Q
    ||||||||||| |||| |||||||||||||||||| |||||||| | |||||| |||| |||||| ||||||||    
T  27582387 caaatattattcaaattatttattctatcatataaggtataatatc-taaattaaacttttatttcatatatta 27582459  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 43299415 - 43299361
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatc 77  Q
    |||| ||||| |||||||||||||||| |||||||| ||| | ||||||||||||    
T  43299415 taagattgtctcgatttcgatcgttacagatgttgcattacatattgcggtcatc 43299361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 21315514 - 21315668
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaatcat 121  Q
    ||||||| ||||||||||    |||||||||||||| ||| ||||| ||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  21315514 taaggttttcgcgatttcagctgttacggatgttgcattacagattacggtcgtcgcggtgtgaattaatcacaacaatgcacaaatattatttaatcat 21315613  T
Q  122 ttattctatcatataatgtataataacttaaattgaactattattttatatatta 176  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21315614 ttattctatcatatagtgtataataacttaaattgaactattattttatatatta 21315668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 46824607 - 46824739
Alignment:
Q  45 gttacggatgttgcgttatagattgcggtcatcgcggtgtaa-ttaatcacaacaatccacaaatattattaaatcatttattctatcatataatgtata 143  Q
    ||||| |||||||| ||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  46824607 gttacagatgttgcattacagattgcgatcgtcgcggtgtaaattaatcacaacaatgcacaaatattatttaatcatttattctatcatatagtgtata 46824706  T
Q  144 ataacttaaattgaactattattttatatatta 176  Q
    | |||||||||||||||||||||||||||||||    
T  46824707 agaacttaaattgaactattattttatatatta 46824739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 16962331 - 16962240
Alignment:
Q  85 aattaatcacaacaatccacaaatattattaaatcatttattctatcatataatgtataataacttaaattgaactattattttatatatta 176  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  16962331 aattaatcacgacaatgcacaaatattattaaatcatttattctatcatataatgtataaaaacttaaattgaactatcattttatatatta 16962240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 46824771 - 46824894
Alignment:
Q  171 atattacaacactatacaacacgaaaatagacgatgaaaggaacatgagatactattgac---tcatcacgatctcctattgtctattttttcttatgaa 267  Q
    ||||||||||||||||||||| |||||||  ||||||||| || |||||||||||||| |   |||||||  | ||  ||| | ||||||||||||||||    
T  46824771 atattacaacactatacaacatgaaaataagcgatgaaagaaatatgagatactattggcggctcatcacagtttctcattatatattttttcttatgaa 46824870  T
Q  268 cggtgttgtgtttttcgcttccgt 291  Q
    ||||||||||||||||||||||||    
T  46824871 cggtgttgtgtttttcgcttccgt 46824894  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 4848694 - 4848643
Alignment:
Q  102 cacaaatattattaaa-tcatttattctatcatataatgtataataacttaa 152  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  4848694 cacaaatattattaaaattatttatactatcatataatgtataataacttaa 4848643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 21315702 - 21315788
Alignment:
Q  173 attacaacactatacaacacgaaaatagacgatgaaaggaacatgagatactattgactcatcacgatctcctattgtctatttttt 259  Q
    ||||||| ||||| ||||| |||| ||| ||||||||| || |||||||||||||| ||||||||  ||||  ||| ||||||||||    
T  21315702 attacaaaactatgcaacatgaaagtaggcgatgaaagcaatatgagatactattggctcatcactgtctctcattatctatttttt 21315788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 5198998 - 5199062
Alignment:
Q  89 aatcacaacaatccacaaatattattaaa-tcatttattctatcatataatgtataataacttaa 152  Q
    ||||| |||| | |||||||||||||||| | ||||||  |||||||||||||||||||||||||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaa 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 11445607 - 11445459
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaatcat 121  Q
    |||||||||| ||||||||   |||| |||||||| || | |||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  11445607 taaggttgtcacgatttcggctgttatggatgttgtgtcacagattgcgttcattgcggtgtgaattaatcacaacaatccacgaatattattaaatcat 11445508  T
Q  122 ttattctatcatataatgtataataacttaaattgaactattattttat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11445507 ttattctatcatataatgtataataacttaaattgaactattattttat 11445459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 42237508 - 42237642
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaa-tca 120  Q
    ||||||| ||| ||||||| | || |||||||||||| || | ||  ||||| ||||||||| |||||| ||||||| | ||||||| |||||||| | |    
T  42237508 taaggttttcgtgatttcggttgtaacggatgttgcgatacaaataacggtcttcgcggtgtgaattaaccacaacattgcacaaatcttattaaaatta 42237607  T
Q  121 tttattctatcatataatgtataataacttaaatt 155  Q
    |||||  ||||| | ||||||||||||||||||||    
T  42237608 tttatattatcaaacaatgtataataacttaaatt 42237642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 6218374 - 6218196
Alignment:
Q  1 taaataacggccgcggtcatgctaaggttgtcgcgatttcgatcgtta---cggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaa 96  Q
    ||||||| || |||||||  | |||||||||||| ||||||   ||||   |||||||||||||| |||||| |||| ||||   || ||||||||||||    
T  6218374 taaataatggtcgcggtcgcgttaaggttgtcgcaatttcggctgttacggcggatgttgcgttacagattgtggtcgtcgcaaagtgaattaatcacaa 6218275  T
Q  97 caatccacaaatattattaaatcatttattctatcatataatgtataataacttaaattgaactattattttatatatt 175  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  6218274 caatgcacaaatattattaaatcatttattctatcatatagtgtataataacttaaattgtactattattttatatatt 6218196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 6218109 - 6218006
Alignment:
Q  184 atacaacacgaaaatagacgatgaaaggaacatgagatactattgactcatcacgatctcctattgtctattttttcttatgaacggtgttgtgtttttc 283  Q
    ||||||||||||||||| || ||||||||| ||||||||||| || ||||| |   ||||  ||| | ||||||| |||||||||| |||||||||||||    
T  6218109 atacaacacgaaaataggcg-tgaaaggaatatgagatactactggctcattagagtctctcattatgtatttttccttatgaacgttgttgtgtttttc 6218011  T
Q  284 gcttc 288  Q
    |||||    
T  6218010 gcttc 6218006  T

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Target: scaffold0006 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 75680 - 75529
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaatcat 121  Q
    ||||| |||||||||||||    ||||| |||||||||||  |||||||||| ||||||||| ||||||||| |||||| ||||||||| ||| |||| |    
T  75680 taaggctgtcgcgatttcggctattacgtatgttgcgttactgattgcggtcgtcgcggtgtgaattaatcagaacaatgcacaaatatcatttaatctt 75581  T
Q  122 ttattctatcatataatgtataataacttaaattgaactattattttatatatta 176  Q
    ||||||||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  75580 ttattctatcatatagtgtataataa---aaattgaactattattttatatatta 75529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 75495 - 75383
Alignment:
Q  173 attacaacactatacaacacgaaaatagacgatgaaaggaacatgagatactattgactcatcacgatctcctattgtctattttttcttatgaacggtg 272  Q
    |||||||| |||||||||| |||||||| |||||||| ||| ||||||||||||   ||||||||  ||||  ||| ||||||||| |||||||||||||    
T  75495 attacaacgctatacaacatgaaaataggcgatgaaatgaatatgagatactatcagctcatcacagtctctcattatctatttttccttatgaacggtg 75396  T
Q  273 ttgtgtttttcgc 285  Q
    |||||||||||||    
T  75395 ttgtgtttttcgc 75383  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 29112613 - 29112532
Alignment:
Q  94 caacaatccacaaatattattaaatcatttattctatcatataatgtataataacttaaattgaactattattttatatatt 175  Q
    ||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29112613 caacaatgcataaatatcattaaatcatttattccatcatataatgtataataacttaaattgaactattattttatatatt 29112532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 24909112 - 24908991
Alignment:
Q  46 ttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaatcatttattctatcatataatgtataa 144  Q
    |||||| | |||||||| ||||||  ||| | ||||||| |||||||||||||||| ||||||||||||||||||||||||||||          |||||    
T  24909112 ttacgggtattgcgttacagattgaagtcgttgcggtgtgaattaatcacaacaatgcacaaatattattaaatcatttattcta----------tataa 24909023  T
Q  145 taacttaaattgaactattattttatatatta 176  Q
    ||||||||||||||||||||||||||||||||    
T  24909022 taacttaaattgaactattattttatatatta 24908991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 24909227 - 24909123
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaatcat 121  Q
    |||||||||||||||||   |  |||||| | |||||||| ||||||  ||| | ||||||| |||||||||||||||| ||||||||||||||||||||    
T  24909227 taaggttgtcgcgattttagttattacgggtattgcgttacagattgaagtcgttgcggtgtgaattaatcacaacaatgcacaaatattattaaatcat 24909128  T
Q  122 ttatt 126  Q
    |||||    
T  24909127 ttatt 24909123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 43579171 - 43579048
Alignment:
Q  1 taaataacggccgcggtcatgctaaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaa 99  Q
    |||||||||| |||||||  |||||||||||| | ||||||   ||||||||| |  ||||| | ||| ||||| || |||||| |||||||||||||||    
T  43579171 taaataacggtcgcggtcgggctaaggttgtcacaatttcggctgttacggatctaacgttacatattacggtcgtcacggtgtgaattaatcacaacaa 43579072  T
Q  100 tccacaaatattattaaatcattt 123  Q
    | ||||||||||||| ||||||||    
T  43579071 tacacaaatattatttaatcattt 43579048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 43578916 - 43578832
Alignment:
Q  205 tgaaaggaacatgagatactattgactcatcacgatctcctattgtctattttttcttatgaacggtgttgtgtttttcgcttcc 289  Q
    |||||| || |||||||||||||| ||||||||  ||||  ||| ||||||||| ||||||||  ||||||||||||||||||||    
T  43578916 tgaaagtaatatgagatactattggctcatcacactctcgcattatctatttttccttatgaattgtgttgtgtttttcgcttcc 43578832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 24908955 - 24908850
Alignment:
Q  185 tacaacacgaaaatagacgatgaaaggaacatgagatactattgactcatcacgatctcctattgtctattttttcttatgaacggtgttgtgtttttcg 284  Q
    |||||||| | ||||| |||||||||||| ||||||||||| ||  ||||||| |||||  ||| |||| |||| |||||||| | ||||||||||||||    
T  24908955 tacaacactacaataggcgatgaaaggaatatgagatactactggttcatcacaatctctcattatcta-ttttccttatgaatgttgttgtgtttttcg 24908857  T
Q  285 cttccgt 291  Q
     ||||||    
T  24908856 tttccgt 24908850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 29112505 - 29112441
Alignment:
Q  173 attacaacactatacaacacgaaaatagacgatgaaaggaacatgagatactattgactcatcac 237  Q
    ||||||||| || | ||||||||||||||| |||||||||| |||||||| ||||| ||||||||    
T  29112505 attacaacattacataacacgaaaatagacaatgaaaggaatatgagatattattggctcatcac 29112441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 32617528 - 32617594
Alignment:
Q  33 gcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaaca 98  Q
    |||||||||| |||||||| ||||||| ||| |||||||||  ||||||||| ||||||||||||||    
T  32617528 gcgatttcgaccgttacgggtgttgcgatatggattgcggttgtcgcggtgtaaattaatcacaaca 32617594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 29112667 - 29112616
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtc 74  Q
    ||||||||||||||||| |   |||||||||||||||||| |||||||||||    
T  29112667 taaggttgtcgcgattttggctgttacggatgttgcgttagagattgcggtc 29112616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 43579046 - 43579012
Alignment:
Q  140 tataataacttaaattgaactattattttatatat 174  Q
    ||||||||||||||||||||||||||| |||||||    
T  43579046 tataataacttaaattgaactattattatatatat 43579012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 1229342 - 1229460
Alignment:
Q  173 attacaacactatacaacacgaaaatagacgatgaaaggaacatgagatactattgactcatcacgatctcctattgtctattttttcttatgaacggtg 272  Q
    |||||||||||||||||||  ||||||| ||||||||| |  ||||||||||||||||||||||| |||||   || ||||||||| |||| ||||||||    
T  1229342 attacaacactatacaacattaaaataggcgatgaaagtattatgagatactattgactcatcacaatctctcgttatctatttttccttaggaacggtg 1229441  T
Q  273 ttgtgtttttcgcttccgt 291  Q
    ||||| |||||||||||||    
T  1229442 ttgtgcttttcgcttccgt 1229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 2718898 - 2718757
Alignment:
Q  17 tcatgctaaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgc-ggtgt-aattaatcacaacaatccacaaatattatt 114  Q
    ||||| |||||||||||||||||| |   ||| | ||||||||||| |||||  ||||||||  ||||| |||||||||||||  | |||||||||||||    
T  2718898 tcatgttaaggttgtcgcgatttcaactattatgaatgttgcgttagagattatggtcatcgttggtgtgaattaatcacaacctttcacaaatattatt 2718799  T
Q  115 aaa-tcatttattctatcatataatgtataataacttaaatt 155  Q
    ||| | ||||||  ||||||||||||||||||||||| ||||    
T  2718798 aaaattatttatattatcatataatgtataataacttcaatt 2718757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 1229260 - 1229308
Alignment:
Q  124 attctatcatataatgtataataacttaaattgaactattattttatat 172  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1229260 attctatcatataatatataataacttaaattgaactattattttatat 1229308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 6134223 - 6134289
Alignment:
Q  85 aattaatcacaacaatccacaaatattattaaa-tcatttattctatcatataatgtataataactt 150  Q
    |||||||||||||| | ||||||| |||||||| |||||||| |||||| |||||||||||||||||    
T  6134223 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 6134289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 2721899 - 2721825
Alignment:
Q  87 ttaatcacaacaatccacaaatattattaaa-tcatttattctatcatataatgtataataacttaaattgaact 160  Q
    |||||||||||  | || ||||||||||||| | |||||| |||||||||||||||||||||||| |||| ||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataataacttcaattaaact 2721825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 3234526 - 3234633
Alignment:
Q  45 gttacggatgttgcgttatagattgcggtcatcgcggtgtaa-ttaatcacaacaatccacaaatattattaaatcatttattctatcatataatgtata 143  Q
    |||||||||| |||||||||||||| |||  || || ||||| |||||   |||| | || |||||||||||||    |||| |||||||||||||||||    
T  3234526 gttacggatgatgcgttatagattgtggttgtcacgatgtaagttaattgtaacattgcataaatattattaaaa---ttatactatcatataatgtata 3234622  T
Q  144 ataacttaaat 154  Q
    |||||||||||    
T  3234623 ataacttaaat 3234633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 9771990 - 9771917
Alignment:
Q  45 gttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattattaaa 117  Q
    |||| ||||||||| |||| ||||| |||| ||||| ||| |||||||||||||| | ||||||| ||||||||    
T  9771990 gttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatgttattaaa 9771917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29349962 - 29350060
Alignment:
Q  1 taaataacggccgcggtcatgctaaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgtaattaatcacaacaa 99  Q
    |||||||||| ||||||| || ||||||||| |||||||||    ||||| ||||||||||||| ||||||||| ||| || || | | ||||||||||    
T  29349962 taaataacggtcgcggtcgtgttaaggttgttgcgatttcggctattacgaatgttgcgttataaattgcggtcgtcgtggcgtgaattatcacaacaa 29350060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 3463 - 3335
Alignment:
Q  23 taaggttgtcgcgatttcgatcgttacggatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaa-tattattaaatca 120  Q
    ||||||||| ||||||||||  || | |  || |||| ||||||||  ||| ||||| |||| |||||||||||||| | |||||| ||| ||||||| |    
T  3463 taaggttgttgcgatttcgacagtaatgagtgctgcgatatagattatggttatcgctgtgtgaattaatcacaacattgcacaaattataattaaatta 3364  T
Q  121 tttattctatcatataatgtataataact 149  Q
    ||||| |||||| |||||| |||||||||    
T  3363 tttatactatcagataatgcataataact 3335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 30742 - 30707
Alignment:
Q  254 ttttttcttatgaacggtgttgtgtttttcgcttcc 289  Q
    |||||||||||||||||||||||||| |||||||||    
T  30742 ttttttcttatgaacggtgttgtgttcttcgcttcc 30707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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