View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0257_high_8 (Length: 274)
Name: NF0257_high_8
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0257_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 10103876 - 10103646
Alignment:
| Q |
10 |
attattctttgaaatcaacatctcttcaaaatgagttttctattttaactaaacataccttaaaagcatcttcatccgttctatcatctccaatgtatat |
109 |
Q |
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| T |
10103876 |
attattctttgaaatcaacatctcttcaaaatgagttttctattttaaccaaacataccttaaaagcatcttcatctgttctatcatctccaatgtatat |
10103777 |
T |
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| Q |
110 |
tggtagaacatcatcaaaggtgttatatccaagagtgtcaagaaaatacattagagcatcacctttattccagtttacatttgggcgtatctccattatc |
209 |
Q |
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| T |
10103776 |
tggtagaacatcatcaaaggtgttatatccaagagtgtcaagaaaatacattagagcatcgcctttattccagttcacatttgggcgtatctccataatc |
10103677 |
T |
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| Q |
210 |
taatataaaacattaaacttatgttaagttt |
240 |
Q |
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| T |
10103676 |
taatataaaacattcaacttatgttaagttt |
10103646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 41340947 - 41340991
Alignment:
| Q |
64 |
ataccttaaaagcatcttcatccgttctatcatctccaatgtata |
108 |
Q |
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| T |
41340947 |
ataccttaaaagcatcttcatcagttttatcatcaccaatatata |
41340991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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