View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_1 (Length: 643)
Name: NF0257_low_1
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_1
Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 33467865 - 33468422
Alignment:
Q
1
tctttccaacacaaatttaccttaatcgatgaatactatccaatagactacttgacaacaaaatgaaatataattgacaccaacattgcatgctcattta
100
Q
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
33467865
tctttccaacacaaatttaccttaatc-atgaatactatccattagactacttgacaacaaaatgaaatataattgacaccaacattgcatgctcattta
33467963
T
Q
101
aatgtaggaaactcatccattaccatacctagctacaaacaaataatatacgaccttcccttatatttaaacaacccccagactgttatttgttgcggac
200
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
T
33467964
aatgtaggaaactcatccattaccatacctagctacaaacaaataatatacgaccttcccttatatttaaacaaacaccagactgttatttgttggggac
33468063
T
Q
201
attgtactcaactctcctttgtgtgtatgctaaaatgacacacactcttcaattttgcaaatatatattagtggtaagtgtatgaaagaagatcagtgtc
300
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
33468064
attgtactcaactctcctttgtgtgtatgctaaaatgacacacactcttcaattttgcaaatatatattagtggtaagtgtatgaaagaagatcagtgtc
33468163
T
Q
301
ttcc-nnnnnnnnnntaaagatgtatgtgtcatct-agacatatcacaccaaaagtgagtcaaattttcccccaaacaatatatcagattctctattcta
398
Q
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
T
33468164
ttccaaaaaaacaaataaagatgtatgtgtcatctaagacatatcacaccaaaagtgagtcaaattttcccccaaaaaatatatcagattctctattcta
33468263
T
Q
399
cgggcttttgtgaaataagtttccaattgatataaagaaatctggaaacacctgagtttagttataatttaatttagttgctatgaagcaagaacactcc
498
Q
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
T
33468264
cgggcttttgtgaaataagtttccaattgatataaagaaatctggaaacatctgagtttagttatattttaatttagttgctatgaagc-agaacactcc
33468362
T
Q
499
tcctattagccgtatactgcaacacagacatatataattacattgaattaagttattttt
558
Q
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
T
33468363
tcctattagccgtgtaccgcaacacagacatatataattacattgaattaagttattttt
33468422
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 34604384 - 34604338
Alignment:
Q
102
atgtaggaaactcatccattaccatacctagctacaaacaaataata
148
Q
|||||||||||||||| |||| ||||||||||||||||| |||||||
T
34604384
atgtaggaaactcatctattatcatacctagctacaaacgaataata
34604338
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 34725661 - 34725615
Alignment:
Q
102
atgtaggaaactcatccattaccatacctagctacaaacaaataata
148
Q
|||||||||||||||| |||| ||||||||||||||||| |||||||
T
34725661
atgtaggaaactcatctattatcatacctagctacaaacgaataata
34725615
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 34728091 - 34728043
Alignment:
Q
340
tatcacaccaaaagtgagtcaaattttcccccaaacaatatatcagatt
388
Q
||||||| || |||||||||||||||||||||||| |||| |||||||
T
34728091
tatcacaacacaagtgagtcaaattttcccccaaaacatatgtcagatt
34728043
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 53871218 - 53871374
Alignment:
Q
110
aactcatccattaccatacc----tagctacaaacaaataatatacgaccttcccttatatttaaacaacccccagactgttatttgttgcggacattgt
205
Q
|||||||||||||||||||| || |||||||| |||||||||| ||||| |||||| |||||||| | |||||| |||||||||| || |||||
T
53871218
aactcatccattaccataccagcatacctacaaacgaataatatacaacctttccttat--ttaaacaaacaccagacccttatttgttggagaaattgt
53871315
T
Q
206
actcaactctcctttgtgtgtatgctaaaatgacacacactcttcaattttgcaaatatata
267
Q
|||||| ||||||| ||| |||||||||||||||||||| ||| |||||| ||| |||||
T
53871316
actcaaatctccttggtg---atgctaaaatgacacacacttttctattttgtaaaaatata
53871374
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 53871518 - 53871576
Alignment:
Q
414
taagtttccaattgatataaagaaatctggaaacacctgagtttagttataatttaatt
472
Q
||||||| ||||||||||||||||| ||||||||||| |||||| |||||| |||||||
T
53871518
taagtttgcaattgatataaagaaaactggaaacacccgagttttgttatattttaatt
53871576
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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