View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0257_low_1 (Length: 643)
Name: NF0257_low_1
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0257_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 33467865 - 33468422
Alignment:
| Q |
1 |
tctttccaacacaaatttaccttaatcgatgaatactatccaatagactacttgacaacaaaatgaaatataattgacaccaacattgcatgctcattta |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33467865 |
tctttccaacacaaatttaccttaatc-atgaatactatccattagactacttgacaacaaaatgaaatataattgacaccaacattgcatgctcattta |
33467963 |
T |
|
| Q |
101 |
aatgtaggaaactcatccattaccatacctagctacaaacaaataatatacgaccttcccttatatttaaacaacccccagactgttatttgttgcggac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
33467964 |
aatgtaggaaactcatccattaccatacctagctacaaacaaataatatacgaccttcccttatatttaaacaaacaccagactgttatttgttggggac |
33468063 |
T |
|
| Q |
201 |
attgtactcaactctcctttgtgtgtatgctaaaatgacacacactcttcaattttgcaaatatatattagtggtaagtgtatgaaagaagatcagtgtc |
300 |
Q |
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| T |
33468064 |
attgtactcaactctcctttgtgtgtatgctaaaatgacacacactcttcaattttgcaaatatatattagtggtaagtgtatgaaagaagatcagtgtc |
33468163 |
T |
|
| Q |
301 |
ttcc-nnnnnnnnnntaaagatgtatgtgtcatct-agacatatcacaccaaaagtgagtcaaattttcccccaaacaatatatcagattctctattcta |
398 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33468164 |
ttccaaaaaaacaaataaagatgtatgtgtcatctaagacatatcacaccaaaagtgagtcaaattttcccccaaaaaatatatcagattctctattcta |
33468263 |
T |
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| Q |
399 |
cgggcttttgtgaaataagtttccaattgatataaagaaatctggaaacacctgagtttagttataatttaatttagttgctatgaagcaagaacactcc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
33468264 |
cgggcttttgtgaaataagtttccaattgatataaagaaatctggaaacatctgagtttagttatattttaatttagttgctatgaagc-agaacactcc |
33468362 |
T |
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| Q |
499 |
tcctattagccgtatactgcaacacagacatatataattacattgaattaagttattttt |
558 |
Q |
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| T |
33468363 |
tcctattagccgtgtaccgcaacacagacatatataattacattgaattaagttattttt |
33468422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 34604384 - 34604338
Alignment:
| Q |
102 |
atgtaggaaactcatccattaccatacctagctacaaacaaataata |
148 |
Q |
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| T |
34604384 |
atgtaggaaactcatctattatcatacctagctacaaacgaataata |
34604338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 34725661 - 34725615
Alignment:
| Q |
102 |
atgtaggaaactcatccattaccatacctagctacaaacaaataata |
148 |
Q |
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|||||||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
34725661 |
atgtaggaaactcatctattatcatacctagctacaaacgaataata |
34725615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 34728091 - 34728043
Alignment:
| Q |
340 |
tatcacaccaaaagtgagtcaaattttcccccaaacaatatatcagatt |
388 |
Q |
| |
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||||||| || |||||||||||||||||||||||| |||| ||||||| |
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| T |
34728091 |
tatcacaacacaagtgagtcaaattttcccccaaaacatatgtcagatt |
34728043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 53871218 - 53871374
Alignment:
| Q |
110 |
aactcatccattaccatacc----tagctacaaacaaataatatacgaccttcccttatatttaaacaacccccagactgttatttgttgcggacattgt |
205 |
Q |
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|||||||||||||||||||| || |||||||| |||||||||| ||||| |||||| |||||||| | |||||| |||||||||| || ||||| |
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| T |
53871218 |
aactcatccattaccataccagcatacctacaaacgaataatatacaacctttccttat--ttaaacaaacaccagacccttatttgttggagaaattgt |
53871315 |
T |
|
| Q |
206 |
actcaactctcctttgtgtgtatgctaaaatgacacacactcttcaattttgcaaatatata |
267 |
Q |
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|||||| ||||||| ||| |||||||||||||||||||| ||| |||||| ||| ||||| |
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| T |
53871316 |
actcaaatctccttggtg---atgctaaaatgacacacacttttctattttgtaaaaatata |
53871374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 53871518 - 53871576
Alignment:
| Q |
414 |
taagtttccaattgatataaagaaatctggaaacacctgagtttagttataatttaatt |
472 |
Q |
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||||||| ||||||||||||||||| ||||||||||| |||||| |||||| ||||||| |
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| T |
53871518 |
taagtttgcaattgatataaagaaaactggaaacacccgagttttgttatattttaatt |
53871576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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