View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_11 (Length: 274)
Name: NF0257_low_11
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_11
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 10103876 - 10103646
Alignment:
Q
10
attattctttgaaatcaacatctcttcaaaatgagttttctattttaactaaacataccttaaaagcatcttcatccgttctatcatctccaatgtatat
109
Q
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
T
10103876
attattctttgaaatcaacatctcttcaaaatgagttttctattttaaccaaacataccttaaaagcatcttcatctgttctatcatctccaatgtatat
10103777
T
Q
110
tggtagaacatcatcaaaggtgttatatccaagagtgtcaagaaaatacattagagcatcacctttattccagtttacatttgggcgtatctccattatc
209
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
T
10103776
tggtagaacatcatcaaaggtgttatatccaagagtgtcaagaaaatacattagagcatcgcctttattccagttcacatttgggcgtatctccataatc
10103677
T
Q
210
taatataaaacattaaacttatgttaagttt
240
Q
|||||||||||||| ||||||||||||||||
T
10103676
taatataaaacattcaacttatgttaagttt
10103646
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 41340947 - 41340991
Alignment:
Q
64
ataccttaaaagcatcttcatccgttctatcatctccaatgtata
108
Q
|||||||||||||||||||||| ||| ||||||| ||||| ||||
T
41340947
ataccttaaaagcatcttcatcagttttatcatcaccaatatata
41340991
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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