View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_14 (Length: 251)
Name: NF0257_low_14
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_14
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10441307 - 10441529
Alignment:
Q
1
atttctgattgaggccttnnnnnnntttgttgtcccttgttcgtttatgcaacttctcactaatcataatcttttacttaatagagtgatttgaatggtt
100
Q
|||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||||
T
10441307
atttctgattgaggccttaaaaaaatttgttgtcctttgttcgtttatgcaacttttcacaaatcataatcttttacttaatagagtgatgtgtatggtt
10441406
T
Q
101
ttcttgttaagtattgctcaaattcaggttcttggtgcaactgatgtatttt-ggggcctttgtatattattttccttttacttctacaaaattctcctt
199
Q
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
T
10441407
ttctagttaagtattgctcaaattcaggttcttggtgcaactgatgtattttgggggcctttgtatattattttccttttacttctacaaaattctcctt
10441506
T
Q
200
tttaggttgatcatattcttttt
222
Q
|||||||||||||||||||||||
T
10441507
tttaggttgatcatattcttttt
10441529
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 9993072 - 9992898
Alignment:
Q
57
tcactaatcataatcttttacttaatagagtgatttgaatggttttcttgttaagtattgctcaaattcaggttcttggtgcaactgatgtattttgggg
156
Q
||||||||||||||||||||||||||||| |||| || ||||||||| | || | ||||| ||||||| | |||||||||||||||||| ||||||||||
T
9993072
tcactaatcataatcttttacttaatagattgatgtgtatggttttcattttcaatattggtcaaatttaagttcttggtgcaactgatttattttgggg
9992973
T
Q
157
--cctt---tgtatattattttccttttacttctacaaaattctcct-----ttttaggttgatcatattcttttt
222
Q
|||| | |||||||| || ||||| ||| ||| |||||||||| ||||||||||||||||||||||||
T
9992972
gtccttcaatttatattatctttctttttcttttac-aaattctcctttttattttaggttgatcatattcttttt
9992898
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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