View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0257_low_14 (Length: 251)
Name: NF0257_low_14
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0257_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10441307 - 10441529
Alignment:
| Q |
1 |
atttctgattgaggccttnnnnnnntttgttgtcccttgttcgtttatgcaacttctcactaatcataatcttttacttaatagagtgatttgaatggtt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
10441307 |
atttctgattgaggccttaaaaaaatttgttgtcctttgttcgtttatgcaacttttcacaaatcataatcttttacttaatagagtgatgtgtatggtt |
10441406 |
T |
|
| Q |
101 |
ttcttgttaagtattgctcaaattcaggttcttggtgcaactgatgtatttt-ggggcctttgtatattattttccttttacttctacaaaattctcctt |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10441407 |
ttctagttaagtattgctcaaattcaggttcttggtgcaactgatgtattttgggggcctttgtatattattttccttttacttctacaaaattctcctt |
10441506 |
T |
|
| Q |
200 |
tttaggttgatcatattcttttt |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10441507 |
tttaggttgatcatattcttttt |
10441529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 9993072 - 9992898
Alignment:
| Q |
57 |
tcactaatcataatcttttacttaatagagtgatttgaatggttttcttgttaagtattgctcaaattcaggttcttggtgcaactgatgtattttgggg |
156 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||||||||| | || | ||||| ||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
9993072 |
tcactaatcataatcttttacttaatagattgatgtgtatggttttcattttcaatattggtcaaatttaagttcttggtgcaactgatttattttgggg |
9992973 |
T |
|
| Q |
157 |
--cctt---tgtatattattttccttttacttctacaaaattctcct-----ttttaggttgatcatattcttttt |
222 |
Q |
| |
|
|||| | |||||||| || ||||| ||| ||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
9992972 |
gtccttcaatttatattatctttctttttcttttac-aaattctcctttttattttaggttgatcatattcttttt |
9992898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University