View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0257_low_15 (Length: 249)

Name: NF0257_low_15
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0257_low_15
NF0257_low_15
[»] chr5 (1 HSPs)
chr5 (1-240)||(10441021-10441260)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10441260 - 10441021
Alignment:
Q  1 atcacagcaatacaacaacatcagccaagccttattaactcccccacacagggtgagatgcttctgagcaataaatcagaaatatttcatcacatgctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10441260 atcacagcaatacaacaacatcagccaagccttattaactcccccacacagggtgagatgcttctgagcaataaatcagaaatatttcatcacatgctta 10441161  T
Q  101 tttctcttattaacaatagactgcaaatcagttaaataatgataatatagttaccttaatgtcacttcctcggaaaagaatgcattcataaaccttgtca 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10441160 tttctcttattaacaatagtctgcaaatcagttaaataatgataatatagttaccttaatgtcacttcctcggaaaagaatgcattcataaaccttgtca 10441061  T
Q  201 cttggaggtacttgttgaccatcttttcttctcctctctg 240  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10441060 cttggaggtacttgttgaccatcttttcttctcccctctg 10441021  T

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