View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_16 (Length: 246)
Name: NF0257_low_16
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_16
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 26880969 - 26880754
Alignment:
Q
1
ctctgtgatcgtaacttcagtgttggtgctgatggagttatatttgtcttgcctggtatcaatggcactgactatacgatgaggattttcaaccctgatg
100
Q
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
T
26880969
ctctgtgatcgtaacttcagtgttggtgcagatgaagttatatttgtcttgcctggtatcaatggcactgactatacaatgaggattttcaactctgatg
26880870
T
Q
101
gtagtgagccttaggtgattaattgttcttaaaattatatttgttcaggtacgtgtcgtaattggttcttggtcttcattaactgacaagtttgctttgt
200
Q
||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
T
26880869
gtagtgagcctgaggtgattaattcttcttaaaattgtatgtgttcaggtacgtatcgtgatttgttcttggtcttcattaactgacaagtttgctttgt
26880770
T
Q
201
ttcttacattcatgca
216
Q
||||||||||||||||
T
26880769
ttcttacattcatgca
26880754
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 40252576 - 40252464
Alignment:
Q
4
tgtgatcgtaacttcagtgttggtgctgatggagttatatttgtcttgcctggtatcaatggcactgactatacgatgaggattttcaaccctgatggta
103
Q
|||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||| ||||| ||||| ||||||||||||||| |||||||||
T
40252576
tgtgatcgtaactttggtgttggtgctgatggagttatctttgtattgcctggtatcgatggtactgattatacaatgaggattttcaactctgatggta
40252477
T
Q
104
gtgagccttaggt
116
Q
|||||||| ||||
T
40252476
gtgagcctgaggt
40252464
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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