View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0257_low_17 (Length: 244)
Name: NF0257_low_17
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0257_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 27313945 - 27313853
Alignment:
| Q |
127 |
agagaatatatatataaaacctcatagactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaa |
219 |
Q |
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| T |
27313945 |
agagaatatatatataaaacctaataaactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaa |
27313853 |
T |
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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 37216025 - 37216097
Alignment:
| Q |
33 |
attaacaccttccttaccacacgcggactccctttataacatgtaatcccacctctttctccacccttcatct |
105 |
Q |
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| T |
37216025 |
attaacaccttccttaccacacgcggactccctttataacatgtaatcccccctctttctccacccttcatct |
37216097 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 11827948 - 11828017
Alignment:
| Q |
135 |
tatatataaaacctcatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca |
204 |
Q |
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| T |
11827948 |
tatatataaaacctaattgactctaaactaataggcctaatagcatagcccattactttattatctaaca |
11828017 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 43516204 - 43516134
Alignment:
| Q |
134 |
atatatataaaacctcatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca |
204 |
Q |
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| T |
43516204 |
atatatataaaacctaatggactctaaactaacaggaccaatagcatagcccattattttattatcaaaca |
43516134 |
T |
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