View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_17 (Length: 244)
Name: NF0257_low_17
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_17
Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 27313945 - 27313853
Alignment:
Q
127
agagaatatatatataaaacctcatagactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaa
219
Q
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
27313945
agagaatatatatataaaacctaataaactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaa
27313853
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 37216025 - 37216097
Alignment:
Q
33
attaacaccttccttaccacacgcggactccctttataacatgtaatcccacctctttctccacccttcatct
105
Q
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
T
37216025
attaacaccttccttaccacacgcggactccctttataacatgtaatcccccctctttctccacccttcatct
37216097
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 11827948 - 11828017
Alignment:
Q
135
tatatataaaacctcatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca
204
Q
|||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||
T
11827948
tatatataaaacctaattgactctaaactaataggcctaatagcatagcccattactttattatctaaca
11828017
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 43516204 - 43516134
Alignment:
Q
134
atatatataaaacctcatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca
204
Q
||||||||||||||| || ||||||||||||| ||| | ||||||||||||||| ||||||||| ||||
T
43516204
atatatataaaacctaatggactctaaactaacaggaccaatagcatagcccattattttattatcaaaca
43516134
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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