View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_20 (Length: 205)
Name: NF0257_low_20
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_20
[» ] chr1 (2 HSPs)
[» ] chr4 (1 HSPs)
Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 38160802 - 38160912
Alignment:
Q
95
ctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaatcaaagaattgcgtgcacttgatgccccaaatgaggaagc
194
Q
|||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
T
38160802
cttttaactttccaatatgcaggattcacaaggagcaggtcgaaaaatggcaggaagaaatcaaagaactgcgtgcacttgatgcctcaaatgaggaagc
38160901
T
Q
195
caatgctcttc
205
Q
|||||||||||
T
38160902
caatgctcttc
38160912
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 38116976 - 38117086
Alignment:
Q
95
ctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaatcaaagaattgcgtgcacttgatgccccaaatgaggaagc
194
Q
|||| |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||||
T
38116976
cttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaaatgaggaagc
38117075
T
Q
195
caatgctcttc
205
Q
|||||||||||
T
38117076
caatgctcttc
38117086
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 49004779 - 49004889
Alignment:
Q
95
ctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaatcaaagaattgcgtgcacttgatgccccaaatgaggaagc
194
Q
|||| |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| | || ||||| |||||| |||||||||||||
T
49004779
cttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgagcactcgatgcctcaaatgaggaagc
49004878
T
Q
195
caatgctcttc
205
Q
|||||||||||
T
49004879
caatgctcttc
49004889
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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