View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0257_low_3 (Length: 497)

Name: NF0257_low_3
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0257_low_3
NF0257_low_3
[»] chr2 (2 HSPs)
chr2 (298-441)||(37215954-37216097)
chr2 (238-301)||(19713444-19713506)
[»] chr5 (2 HSPs)
chr5 (1-300)||(42862448-42862730)
chr5 (224-301)||(25043886-25043964)
[»] chr6 (1 HSPs)
chr6 (13-301)||(19814464-19814737)
[»] scaffold0657 (1 HSPs)
scaffold0657 (13-301)||(8299-8572)
[»] chr3 (2 HSPs)
chr3 (13-113)||(1203385-1203489)
chr3 (126-180)||(1203486-1203538)
[»] chr4 (1 HSPs)
chr4 (204-301)||(41951079-41951175)
[»] chr7 (1 HSPs)
chr7 (263-301)||(7646713-7646751)
[»] chr1 (1 HSPs)
chr1 (255-301)||(20600464-20600514)
[»] scaffold0150 (1 HSPs)
scaffold0150 (224-299)||(34805-34881)
[»] scaffold0028 (1 HSPs)
scaffold0028 (224-299)||(147443-147519)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 298 - 441
Target Start/End: Original strand, 37215954 - 37216097
Alignment:
Q  298 accacccttcacactaacaaccaccactactcacatgtcctcacttccctctctacaacccctttgacaacattaacaccttccttaccacacgcggact 397  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37215954 accacccttcacactaacaaccaccactactcacatgccctcacttccctctctacaacccctttgacaaaattaacaccttccttaccacacgcggact 37216053  T
Q  398 ccctttataacatgtaatcccacctctttctccacccttcatct 441  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  37216054 ccctttataacatgtaatcccccctctttctccacccttcatct 37216097  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 19713444 - 19713506
Alignment:
Q  238 catgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 301  Q
    |||||||||| |||   ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  19713444 catgcgtcatgcaagatcgtcccaccccaaaa-tatttttccgaggattattgctctgatacca 19713506  T

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Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 42862730 - 42862448
Alignment:
Q  1 tcatcaacaaaataaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacacca----actcaattgctgcagattt 96  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||||| | ||||||| |||| ||    ||||||||||||||||||     
T  42862730 tcataaacaaaataatctatatattagcaacctatatatccacaccatgaaagaattaaagagactatatgacaacaaactactcaattgctgcagattc 42862631  T
Q  97 acgcttaacatcttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnnnnn 196  Q
    |||||||||||||                |||||||| |||||||||||||||||||||||||| |||||||||||||||||||    |||||||         
T  42862630 acgcttaacatct----------------tcaagaagccatatatatacaagtacatttagatcatcaatttaataacagaaaaaatgtcaagacaaaaa 42862547  T
Q  197 nnnncaaatggatcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctga 296  Q
         ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||||| ||||||| ||||||    
T  42862546 a----aaaaggatcaaatcattcccaaacatcaatcaaaagcatgcgtcatacaaacacgtccca-ccctaaaatattagtccgaagattattactctga 42862452  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 25043886 - 25043964
Alignment:
Q  224 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt--gtccgaggattattgctctgatacca 301  Q
    ||||||||||||| || |||||||||||   |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  25043886 acatcaatcaaaa-cacgcgtcatacaagatcgtcccaccccaaaaatatttttgtccgaggattattgctctgatacca 25043964  T

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Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 19814464 - 19814737
Alignment:
Q  13 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 108  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  19814464 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 19814563  T
Q  109 ttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnnnnnnnnnca-aatgg 207  Q
    |||||                |||||||||||||  |||||||||||||||| |||||||||||||||||||    |||||||          | ||||     
T  19814564 ttcaa----------------gaagtcatatata--caagtacatttagatcatcaatttaataacagaaaaatg-tcaagacaaagaaaataacaatga 19814644  T
Q  208 atcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 301  Q
    |||||||||||| || |||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19814645 atcaaatcattcacagacatcaatcaaa-gcatgcgtcataaaaacacgtcccaccccaaaaatattagtccgaggattattgctctgatacca 19814737  T

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Target: scaffold0657 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 8299 - 8572
Alignment:
Q  13 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 108  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  8299 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 8398  T
Q  109 ttcaattaaaataagcatcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaacgcatcaagacnnnnnnnnnca-aatgg 207  Q
    |||||                ||| |||||||||  |||||||||||||||| |||||||||||||||||||    |||||||          | ||||     
T  8399 ttcaa----------------gaaatcatatata--caagtacatttagatcatcaatttaataacagaaaaatg-tcaagacaaagaaaataacaatga 8479  T
Q  208 atcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 301  Q
    |||||||||||| || |||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8480 atcaaatcattcacagacatcaatcaaa-gcatgcgtcataaaaacacgtcccaccccaaaaatattagtccgaggattattgctctgatacca 8572  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 1203385 - 1203489
Alignment:
Q  13 taaactatttattagcaacttatatatccacaccatgaaagaattaatgggactataagacaccaac----tcaattgctgcagatttacgcttaacatc 108  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| | ||||||| ||||||||     |||||||||||||||| ||||||||||||    
T  1203385 taaactatatattagcaacctatatatccacaccatgagagaattaaagagactatatgacaccaaactattcaattgctgcagattcacgcttaacatc 1203484  T
Q  109 ttcaa 113  Q
    |||||    
T  1203485 ttcaa 1203489  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 1203486 - 1203538
Alignment:
Q  126 tcaagaagtcatatatatacaagtacatttagatcttcaatttaataacagaaaa 180  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||||||||||||||    
T  1203486 tcaagaagtcatat--atacaagtaaatttagatcatcaatttaataacagaaaa 1203538  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 41951079 - 41951175
Alignment:
Q  204 atggatcaaatcattctcaaacatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatatttgtccgaggattattgctctgatacca 301  Q
    |||||||||| ||||| || |  |||||||||||||||| ||||| |||  |||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  41951079 atggatcaaaacattcacacaactcaatcaaaagcatgcatcatataaaagcgtcccaccc-aaaaatatttgtccgaggactattgctcttatacca 41951175  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 7646751 - 7646713
Alignment:
Q  263 cccaaaaatatttgtccgaggattattgctctgatacca 301  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7646751 cccaaaaacatttgtccgaggattattgctctgatacca 7646713  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 20600464 - 20600514
Alignment:
Q  255 cgtcccaccccaaaaatattt----gtccgaggattattgctctgatacca 301  Q
    |||||||||||||||||||||    ||||||||||||| ||||||||||||    
T  20600464 cgtcccaccccaaaaatatttttttgtccgaggattatcgctctgatacca 20600514  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 34805 - 34881
Alignment:
Q  224 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt---gtccgaggattattgctctgatac 299  Q
    |||||||||||| |||| | |||||| ||| |||||||||| ||||||||||   ||||||||||||||||||| ||||    
T  34805 acatcaatcaaa-gcatacatcatacgaattcgtcccaccc-aaaaatattttttgtccgaggattattgctctaatac 34881  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 147443 - 147519
Alignment:
Q  224 acatcaatcaaaagcatgcgtcatacaaatacgtcccaccccaaaaatattt---gtccgaggattattgctctgatac 299  Q
    |||||||||||| |||| | |||||| ||| |||||||||| ||||||||||   ||||||||||||||||||| ||||    
T  147443 acatcaatcaaa-gcatacatcatacgaattcgtcccaccc-aaaaatattttttgtccgaggattattgctctaatac 147519  T

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