View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_5 (Length: 399)
Name: NF0257_low_5
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_5
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 49941258 - 49941618
Alignment:
Q
11
cagagaataacttaaacccaacttcccaacatatgtgatttttgacagaattgcatctggaaacaagtctactgtgatttgtgactccaatttacaaaag
110
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
49941258
cagagaataacttaaacccaacttcccaacatatgtgatttttgacagaattgcatctggaaacaagtctactgtgatttgtgactccaatttacaaaag
49941357
T
Q
111
aactttccggtagtgaaatattatctctaccttccaaaaaagtgattttggaattgcttaacaagtgcttccacaaataaataattatacaataagtaaa
210
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
49941358
aactttccggtagtgaaatattatctctaccttccaaaaaagtgattttggaattgcttaacaagtgcttccacaaataaataattatacaataagtaaa
49941457
T
Q
211
caagcataaatatgatcataagtacctggcacataatatttaattctcctttctcagggtgaatgccaaaatctcctgatgcttctagagggatgctgcc
310
Q
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
49941458
caaacataaacatgattataagtacctggcacataatatttaattctcctttctcagggtgaatgccaaaatctcctgatgcttctagagggatgctgcc
49941557
T
Q
311
aaaccagccacatgcattgtgtaaaaatattctttgaacacgaaaacacaaacttgctgat
371
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
49941558
aaaccagccacatgcattgtgtaaaaatattctttgaacacgaaaacacaaacttgctgat
49941618
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 230 - 364
Target Start/End: Complemental strand, 1906987 - 1906853
Alignment:
Q
230
aagtacctggcacataatatttaattctcctttctcagggtgaatgccaaaatctcctgatgcttctagagggatgctgccaaaccagccacatgcattg
329
Q
||||||||| ||||||| || || ||||||| || || ||||||||||| |||||||||||||||||||| | |||||||||| |||| |||||||
T
1906987
aagtacctgacacataagatggaactctccttcttcgggatgaatgccaaagtctcctgatgcttctagaggaacactgccaaaccggccatttgcattg
1906888
T
Q
330
tgtaaaaatattctttgaacacgaaaacacaaact
364
Q
|||||||||||||||||| | |||||||| |||||
T
1906887
tgtaaaaatattctttgaccgcgaaaacataaact
1906853
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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