View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0257_low_5 (Length: 399)
Name: NF0257_low_5
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0257_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 49941258 - 49941618
Alignment:
| Q |
11 |
cagagaataacttaaacccaacttcccaacatatgtgatttttgacagaattgcatctggaaacaagtctactgtgatttgtgactccaatttacaaaag |
110 |
Q |
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| T |
49941258 |
cagagaataacttaaacccaacttcccaacatatgtgatttttgacagaattgcatctggaaacaagtctactgtgatttgtgactccaatttacaaaag |
49941357 |
T |
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| Q |
111 |
aactttccggtagtgaaatattatctctaccttccaaaaaagtgattttggaattgcttaacaagtgcttccacaaataaataattatacaataagtaaa |
210 |
Q |
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| T |
49941358 |
aactttccggtagtgaaatattatctctaccttccaaaaaagtgattttggaattgcttaacaagtgcttccacaaataaataattatacaataagtaaa |
49941457 |
T |
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| Q |
211 |
caagcataaatatgatcataagtacctggcacataatatttaattctcctttctcagggtgaatgccaaaatctcctgatgcttctagagggatgctgcc |
310 |
Q |
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| T |
49941458 |
caaacataaacatgattataagtacctggcacataatatttaattctcctttctcagggtgaatgccaaaatctcctgatgcttctagagggatgctgcc |
49941557 |
T |
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| Q |
311 |
aaaccagccacatgcattgtgtaaaaatattctttgaacacgaaaacacaaacttgctgat |
371 |
Q |
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| T |
49941558 |
aaaccagccacatgcattgtgtaaaaatattctttgaacacgaaaacacaaacttgctgat |
49941618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 230 - 364
Target Start/End: Complemental strand, 1906987 - 1906853
Alignment:
| Q |
230 |
aagtacctggcacataatatttaattctcctttctcagggtgaatgccaaaatctcctgatgcttctagagggatgctgccaaaccagccacatgcattg |
329 |
Q |
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| T |
1906987 |
aagtacctgacacataagatggaactctccttcttcgggatgaatgccaaagtctcctgatgcttctagaggaacactgccaaaccggccatttgcattg |
1906888 |
T |
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| Q |
330 |
tgtaaaaatattctttgaacacgaaaacacaaact |
364 |
Q |
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| T |
1906887 |
tgtaaaaatattctttgaccgcgaaaacataaact |
1906853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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