View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_6 (Length: 346)
Name: NF0257_low_6
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_6
Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 15593660 - 15593484
Alignment:
Q
30
attgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctacataggtcttgattaatc
129
Q
|||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
T
15593660
attgacacattgacaccactaataatttgaaaaaatagattaatcgaacatagtcacatgcgtttgtgtcgtgtcagtgctacataggtcttgattcatc
15593561
T
Q
130
aactttcctatcaatgcggcagactataagtttccaattcaagcaactacaaagcctgtaaatcccaatatactagca
207
Q
|||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||
T
15593560
aactttcctatcaatgtgggagactataag-ttccaattcaagtaactacaaagcctgtaaattccaacttactagca
15593484
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 15593380 - 15593324
Alignment:
Q
215
gagcaagaatgaagtgttgtcacttgccatcactcatcctggtttcctctattaggg
271
Q
||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||
T
15593380
gagcaagaatgaagtgttgtcacttgcaatcactcaccgtggtttcctctatcaggg
15593324
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 15593299 - 15593256
Alignment:
Q
292
gaacaagccaccacaccatcctcatcagttccattccacttcat
335
Q
||||||||||||||||||||||| | ||||||||||||||||||
T
15593299
gaacaagccaccacaccatcctcgttagttccattccacttcat
15593256
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9483377 - 9483420
Alignment:
Q
34
acacgttgacaccactaataatttgaaaaaatagaataattgaa
77
Q
|||| ||||||||| ||||||||||| |||||||||||||||||
T
9483377
acacattgacaccaataataatttgagaaaatagaataattgaa
9483420
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 31924414 - 31924477
Alignment:
Q
29
aattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgt
92
Q
|||||||||||||||||| ||||||||| | ||||||||| ||||||| || ||||||||||
T
31924414
aattgacacgttgacaccgataataatttaagaaaatagaacaattgaatataatcacatgtgt
31924477
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 42720958 - 42720925
Alignment:
Q
32
tgacacgttgacaccactaataatttgaaaaaat
65
Q
||||||||||||||| ||||||||||||||||||
T
42720958
tgacacgttgacaccgctaataatttgaaaaaat
42720925
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 32145226 - 32145284
Alignment:
Q
30
attgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacat
88
Q
|||||||| || |||||| ||||||||||| ||||| |||||||| |||||| ||||||
T
32145226
attgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacat
32145284
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 26656785 - 26656716
Alignment:
Q
34
acacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgt
103
Q
||||||||||| || || ||||||| ||||||| ||||||| || ||| ||||||||||||||| ||||
T
26656785
acacgttgacaacagtagtaatttggaaaaataaaataattcaatgtaaccacatgtgtttgtgttgtgt
26656716
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 51733135 - 51733216
Alignment:
Q
32
tgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca
113
Q
||||| ||||||||| |||||| |||| |||||||||||||||||||| || |||||| |||| ||||| ||||||||
T
51733135
tgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca
51733216
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 49636877 - 49636813
Alignment:
Q
49
taataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca
113
Q
||||||||||| ||||| | |||||||| ||| ||||||| | | |||||||||||||||||||
T
49636877
taataatttgagaaaatgaattaattgaatgtaatcacatgcgctggtgtcgtgtcagtgctaca
49636813
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 12941003 - 12940970
Alignment:
Q
32
tgacacgttgacaccactaataatttgaaaaaat
65
Q
|||||||||||||| |||||||||||||||||||
T
12941003
tgacacgttgacacaactaataatttgaaaaaat
12940970
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 9895147 - 9895199
Alignment:
Q
41
gacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtt
93
Q
||||||| ||||||||||| |||||| | || ||||||||| |||||||||||
T
9895147
gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgtt
9895199
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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