View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0257_low_6 (Length: 346)

Name: NF0257_low_6
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0257_low_6
NF0257_low_6
[»] chr1 (3 HSPs)
chr1 (30-207)||(15593484-15593660)
chr1 (215-271)||(15593324-15593380)
chr1 (292-335)||(15593256-15593299)
[»] chr7 (3 HSPs)
chr7 (34-77)||(9483377-9483420)
chr7 (29-92)||(31924414-31924477)
chr7 (32-65)||(42720925-42720958)
[»] chr8 (1 HSPs)
chr8 (30-88)||(32145226-32145284)
[»] chr3 (3 HSPs)
chr3 (34-103)||(26656716-26656785)
chr3 (32-113)||(51733135-51733216)
chr3 (49-113)||(49636813-49636877)
[»] chr2 (1 HSPs)
chr2 (32-65)||(12940970-12941003)
[»] chr5 (1 HSPs)
chr5 (41-93)||(9895147-9895199)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 15593660 - 15593484
Alignment:
Q  30 attgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctacataggtcttgattaatc 129  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  15593660 attgacacattgacaccactaataatttgaaaaaatagattaatcgaacatagtcacatgcgtttgtgtcgtgtcagtgctacataggtcttgattcatc 15593561  T
Q  130 aactttcctatcaatgcggcagactataagtttccaattcaagcaactacaaagcctgtaaatcccaatatactagca 207  Q
    |||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||| ||||  ||||||||    
T  15593560 aactttcctatcaatgtgggagactataag-ttccaattcaagtaactacaaagcctgtaaattccaacttactagca 15593484  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 15593380 - 15593324
Alignment:
Q  215 gagcaagaatgaagtgttgtcacttgccatcactcatcctggtttcctctattaggg 271  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||    
T  15593380 gagcaagaatgaagtgttgtcacttgcaatcactcaccgtggtttcctctatcaggg 15593324  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 15593299 - 15593256
Alignment:
Q  292 gaacaagccaccacaccatcctcatcagttccattccacttcat 335  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  15593299 gaacaagccaccacaccatcctcgttagttccattccacttcat 15593256  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9483377 - 9483420
Alignment:
Q  34 acacgttgacaccactaataatttgaaaaaatagaataattgaa 77  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||    
T  9483377 acacattgacaccaataataatttgagaaaatagaataattgaa 9483420  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 31924414 - 31924477
Alignment:
Q  29 aattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgt 92  Q
    ||||||||||||||||||  ||||||||| | ||||||||| |||||||  || ||||||||||    
T  31924414 aattgacacgttgacaccgataataatttaagaaaatagaacaattgaatataatcacatgtgt 31924477  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 42720958 - 42720925
Alignment:
Q  32 tgacacgttgacaccactaataatttgaaaaaat 65  Q
    ||||||||||||||| ||||||||||||||||||    
T  42720958 tgacacgttgacaccgctaataatttgaaaaaat 42720925  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 32145226 - 32145284
Alignment:
Q  30 attgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacat 88  Q
    |||||||| || |||||| ||||||||||| ||||| |||||||| |||||| ||||||    
T  32145226 attgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacat 32145284  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 26656785 - 26656716
Alignment:
Q  34 acacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgt 103  Q
    ||||||||||| || || ||||||| ||||||| ||||||| || |||  ||||||||||||||| ||||    
T  26656785 acacgttgacaacagtagtaatttggaaaaataaaataattcaatgtaaccacatgtgtttgtgttgtgt 26656716  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 51733135 - 51733216
Alignment:
Q  32 tgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 113  Q
    ||||| |||||||||  |||||| |||| ||||||||||||||||||||   || ||||||  |||| ||||| ||||||||    
T  51733135 tgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca 51733216  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 49636877 - 49636813
Alignment:
Q  49 taataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 113  Q
    ||||||||||| |||||  | |||||||| ||| ||||||| | | |||||||||||||||||||    
T  49636877 taataatttgagaaaatgaattaattgaatgtaatcacatgcgctggtgtcgtgtcagtgctaca 49636813  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 12941003 - 12940970
Alignment:
Q  32 tgacacgttgacaccactaataatttgaaaaaat 65  Q
    |||||||||||||| |||||||||||||||||||    
T  12941003 tgacacgttgacacaactaataatttgaaaaaat 12940970  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 9895147 - 9895199
Alignment:
Q  41 gacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtt 93  Q
    ||||||| ||||||||||| |||||| | || ||||||||| |||||||||||    
T  9895147 gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgtt 9895199  T

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