View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0257_low_7 (Length: 321)

Name: NF0257_low_7

Description: NF0257

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0257_low_7

[»] chr2 (1 HSPs)

Alignment Details

Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 138; E-Value: 4e-72

Query Start/End: Original strand, 93 - 265

Target Start/End: Original strand, 39353903 - 39354069

Alignment:

Q	93	aaattctctgtgatcgttagtttgattagcgtcacaaagcagcatgttcttgtggatattccgtccaagacaagagtttgaggctttattcttcacggaa	192	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39353903	aaattctctgtgatcgttagtttgattagcgtcacaaagcagcatgttcttgtggatattccatcgaatacaagagtttgaggctttattcttcacggaa	39354002	T

Q	193	ttacattccacacatcagagtcacaccacaataatgttttctcaaaattacctcatgccgctcgtgccttcat	265	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39354003	ttacattccacaca------tcacaccacaataatgttttctcaaaattacctcatgccgctcgtgccttcat	39354069	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

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