View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0257_low_8 (Length: 319)
Name: NF0257_low_8
Description: NF0257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0257_low_8
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 27054365 - 27054087
Alignment:
Q
7
tgaccgcggccgttatttaaaaccttgatacaaaacatatactat----aaattagtattgcatgcaacaacaaagaaacccgcaacactctcctatatt
102
Q
|||||||| || ||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
T
27054365
tgaccgcgaccattatttaaaactttaatacaaaacatatactatttataaattagtattgcatacaacaacaaagaaacccgcaacactcttctatatt
27054266
T
Q
103
tttctctcaatctgatctaagtagaaaatattgaagaaatataaccaaacatgaataaaatgcataaccagcttaatcacataattcacaccctctttat
202
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
T
27054265
tttctctcaatctgatctaagtagaaaatattgaagaaatataaccaaacatgaataa---------ccagcttaatcacataattcacaccctctttat
27054175
T
Q
203
cttcactatcatcattctttccacactcactgtgagcatatataatttagtttttcattttgtctaatatgcgtgaatactactgcat
290
Q
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
T
27054174
cttcactatcatcattctttccacactcactgtaagcatatataattcagtttttcattttgtctaatatgcgtgaatactactgcat
27054087
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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