View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0258_low_1 (Length: 457)
Name: NF0258_low_1
Description: NF0258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0258_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 329
Target Start/End: Original strand, 44756667 - 44756966
Alignment:
| Q |
30 |
gatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgttttctgttcatttgg |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
44756667 |
gatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttacgaggattcgttttctgttcatttgg |
44756766 |
T |
|
| Q |
130 |
ttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaactattgttga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44756767 |
ttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaactattgttga |
44756866 |
T |
|
| Q |
230 |
ggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacctgagaattttttgtttgattctggtgatgaagatgctcttctcaaaact |
329 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44756867 |
ggttgttgaagcttgtcattctcttggagttatgcacagagaccttaaacctgagaattttttgtttgattctgttgatgaagatgctcttctcaaaact |
44756966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 329
Target Start/End: Original strand, 44766760 - 44767059
Alignment:
| Q |
30 |
gatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgttttctgttcatttgg |
129 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| || ||| ||||||||||||||||||||| || ||| ||||||||| | |||| ||||||||||| |
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| T |
44766760 |
gatgcttggagagagattcaaataatgcaccatttatccgaacatccaaatgttgtgaggatccgtgaaacatatgaggattcattttttgttcatttgg |
44766859 |
T |
|
| Q |
130 |
ttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaactattgttga |
229 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44766860 |
ttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaagggtcattatagtgagagacaagctgctaagttgattaagactattgttga |
44766959 |
T |
|
| Q |
230 |
ggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacctgagaattttttgtttgattctggtgatgaagatgctcttctcaaaact |
329 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||| |
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| T |
44766960 |
ggttgttgaagcttgtcattctcttggagttatgcatagagaccttaaacctgagaattttctatttgattctgttgatgaagatgctgttctcaaaact |
44767059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 44757031 - 44757073
Alignment:
| Q |
395 |
cagattcagttgatttgtgaattgataaatgatttgatgatgt |
437 |
Q |
| |
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|
| T |
44757031 |
cagattcagtttatttgtgaattgataaatgatttgatgatgt |
44757073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 23287623 - 23287353
Alignment:
| Q |
30 |
gatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgttttctgtt------- |
122 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||| | |||||||||| || |||||| | || |
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| T |
23287623 |
gatgtttggagagagattcaaataatgcaccatttatctgaacatccaaatgtcgtgaggatccacgaaacttatgagtattcgtttttttttttcttct |
23287524 |
T |
|
| Q |
123 |
-catttggttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaact |
221 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| | | |||||||||| | ||| |
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| T |
23287523 |
tcgtttggttatggagctttgtgaaggttgggaattgtttgataggattgtgcagaagggtcattatagtgagagacaaaccgttaagttgattgggact |
23287424 |
T |
|
| Q |
222 |
attgttgaggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacctgagaatttttt |
292 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||| |||||||| |||||| |||||| ||||| |||||| |
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|
| T |
23287423 |
attgttgaggatgttgatgcttgtcattctcttggtgttatgcatagagactttaaacatgagattttttt |
23287353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 124 - 329
Target Start/End: Original strand, 23255877 - 23256083
Alignment:
| Q |
124 |
atttggttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaactat |
223 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||| || ||||||||||| || |||| ||||| ||||||||| ||||| |
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|
| T |
23255877 |
atttggttatggagatttgtgaaggtgaggaattgtttgatgggattatgcagaagggtcattatagtgataggcaagttgctacgttgattaggactat |
23255976 |
T |
|
| Q |
224 |
tgttgaggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacctgag-aattttttgtttgattctggtgatgaagatgctcttct |
322 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||| |||| ||||||||| ||| |||||||||||| |||||| ||||||||||| | |||| |
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| T |
23255977 |
tgttgaggttgttgaagcttgtcattctcttggtgttatgcatagaggccttaaaccagagaaattttttgtttaattctgttgatgaagatgttgttct |
23256076 |
T |
|
| Q |
323 |
caaaact |
329 |
Q |
| |
|
||||||| |
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|
| T |
23256077 |
caaaact |
23256083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 315
Target Start/End: Original strand, 23286943 - 23287233
Alignment:
| Q |
30 |
gatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgtt--ttctgttcattt |
127 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||| | |||||||||| | || || | ||||||| |
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|
| T |
23286943 |
gatgtttggacagagatttagataatgcaccatttatctgaacatccaaatgttgtgaggatctagcaaacttatgagatttttttattttttttcattt |
23287042 |
T |
|
| Q |
128 |
ggttatggagctttgtgaaggtggggaat---tgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaactatt |
224 |
Q |
| |
|
||||||| |||||| |||||||||||||| | ||||| ||||||||| |||| || ||||||||||| ||||||||| ||| ||||| ||| |||||| |
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|
| T |
23287043 |
ggttatgaagctttttgaaggtggggaataattttttgaaaggattgtgtagaagggtcattatagtgatagacaagctcctacgttgactaggactatt |
23287142 |
T |
|
| Q |
225 |
gttgaggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacctgagaattttttgtttgattctggtgatgaagatg |
315 |
Q |
| |
|
|||||| || |||||||||||| || | |||| |||||||| | |||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
23287143 |
gttgagtttcttgaagcttgtccttatcttggtgttatgcataaagaccttaaacctgagaattttttgtttgaatatgttgatgaagatg |
23287233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 30 - 300
Target Start/End: Complemental strand, 23256624 - 23256352
Alignment:
| Q |
30 |
gatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgt--tttctgttcattt |
127 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||| | | ||| | ||||||| |
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|
| T |
23256624 |
gatgtttagagagagattcaaaaaatgcaccatttatctgaacatccaaatgttg--aggatccatgaaacttatgaggattcttcttttttcttcattt |
23256527 |
T |
|
| Q |
128 |
ggttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaactattgtt |
227 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| ||||| || ||| ||||| ||||||| | |||||| |||||||| |||| |||| |
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|
| T |
23256526 |
ggttaaagagctttgtgatggtggggaattgtttgataggattgtccagaagggtcatcatagtaagagacatgttgctaaattgattaggactagtgtt |
23256427 |
T |
|
| Q |
228 |
gaggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacct--gagaattttttgtttgatt |
300 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||| ||||| |||||||| || | |||||||||||||| |
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|
| T |
23256426 |
gaggttgttgttgcttgtcattctcttaatgttatgcagggagactttaaacctaagatatttttttgtttgatt |
23256352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 30 - 299
Target Start/End: Complemental strand, 43465249 - 43464980
Alignment:
| Q |
30 |
gatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgttttctgttcatttgg |
129 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||| |||||||||| || || || ||||| ||||||||| | | | ||| ||||||| |
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|
| T |
43465249 |
gatgtgtggagagagattcagatcatgcaccatttatctgaacatccaaatgtggttcaaattcaaggaacctatgaggattctgtgtttgtgcatttgg |
43465150 |
T |
|
| Q |
130 |
ttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaactattgttga |
229 |
Q |
| |
|
| |||||| | |||| ||||| || | ||||||| ||| | || || || ||||||||||||| | | ||||| |||||||| | || ||||||| |
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|
| T |
43465149 |
tgatggagttgtgtgctggtggtgagctttttgataagatcattcaaaagggtcattatagtgagaaagaggctgcaaagttgatgaagacaattgttgg |
43465050 |
T |
|
| Q |
230 |
ggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacctgagaattttttgtttgat |
299 |
Q |
| |
|
|||||||| | ||||||||| |||| || ||||||||||| ||||| ||||| ||||| ||||||||| |
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|
| T |
43465049 |
tgttgttgagacatgtcattctcttggtgtcatgcacagagatcttaagcctgaaaatttcttgtttgat |
43464980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 23255794 - 23255856
Alignment:
| Q |
30 |
gatgtttggagagagattcagataatgcaccatttgtctgaaaatcc-aaatgttgtgaggat |
91 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||||| |||| |||| |||||||||| |
|
|
| T |
23255794 |
gatgtctggagagagatttagataatgcaccatttatctgaacatccaaaatattgtgaggat |
23255856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 18400117 - 18400194
Alignment:
| Q |
213 |
attagaactattgttgaggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacctgagaatttt |
290 |
Q |
| |
|
||||| ||||| |||| ||||||||||| ||||||||| |||| || ||||| ||||||||||| || ||||||||| |
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|
| T |
18400117 |
attaggactatagttggtgttgttgaagcctgtcattctcttggtgtgatgcatagagaccttaagcccgagaatttt |
18400194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 24421007 - 24420922
Alignment:
| Q |
104 |
tgaggatgcgttttctgttcatttggttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattata |
189 |
Q |
| |
|
||||||||| || |||||||| | ||||||||| | |||| |||||| ||| | ||||||||||||||| | | ||||||||||| |
|
|
| T |
24421007 |
tgaggatgctgttgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattata |
24420922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 29 - 317
Target Start/End: Original strand, 39940096 - 39940384
Alignment:
| Q |
29 |
agatgtttggagagagattcagataatgcaccatttgtctgaaaatccaaatgttgtgaggatccatggaacttatgaggatgcgttttctgttcatttg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |||| | ||||| || || | ||||| ||||||||| | | |||||||| | |
|
|
| T |
39940096 |
agatgtttggagagagattcagataatgcatcatttatctgaacatcctcacgttgttagaatagaaggaacgtatgaggattctactgctgttcatatt |
39940195 |
T |
|
| Q |
129 |
gttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaaagggcattatagtgagagacaagctgctaagttgattagaactattgttg |
228 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||||||||||| | || || ||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
39940196 |
gttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaagggtcattatagtgaaagacaagctgctggtttgattaagactattgttg |
39940295 |
T |
|
| Q |
229 |
aggttgttgaagcttgtcattctgttggagttatgcacagagaccttaaacctgagaattttttgtttgattctggtgatgaagatgct |
317 |
Q |
| |
|
| ||||||||| ||||||| ||| |||| |||||||| || || |||||||| ||||||||| | |||||| ||| ||||||||||||| |
|
|
| T |
39940296 |
aagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaaaccggagaattttctctttgatactgttgatgaagatgct |
39940384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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