View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0258_low_10 (Length: 320)
Name: NF0258_low_10
Description: NF0258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0258_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 8004655 - 8004359
Alignment:
| Q |
1 |
aaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtaattagattagacatatcatacgaacaagtaccaccagagagaacataatt |
100 |
Q |
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| T |
8004655 |
aaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtgattagattagacatatcatacgaacaagtaccaccagagagaacataatt |
8004556 |
T |
|
| Q |
101 |
ttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8004555 |
ttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaaggttcatc |
8004456 |
T |
|
| Q |
201 |
ccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatgatga |
297 |
Q |
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| T |
8004455 |
ccggtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatgatga |
8004359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 76 - 297
Target Start/End: Original strand, 7900522 - 7900747
Alignment:
| Q |
76 |
aagtaccaccagagagaaca---taattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaat |
172 |
Q |
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|||||||||||||||||||| |||||||| ||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7900522 |
aagtaccaccagagagaacaacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaat |
7900621 |
T |
|
| Q |
173 |
gacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaatt-aattgaaggttgaccctcataaacgataacttt |
271 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
7900622 |
gacacttacagataagaaaaggttcatcccagtaagcagtgattgtggacagtttgcagtaaaattaaattgaaggttgaccctcaagaacgataacttt |
7900721 |
T |
|
| Q |
272 |
gtcagcaagataagttgccatgatga |
297 |
Q |
| |
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||||||||||||| |||||||||||| |
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| T |
7900722 |
gtcagcaagataatttgccatgatga |
7900747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 94 - 297
Target Start/End: Complemental strand, 51518882 - 51518679
Alignment:
| Q |
94 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
193 |
Q |
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|||| ||||| ||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
|
| Q |
194 |
attcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatg |
293 |
Q |
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|||||||| || ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
51518782 |
gttcatcccggtcagcaatgattgtggacaatttgcagtacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatg |
51518683 |
T |
|
| Q |
294 |
atga |
297 |
Q |
| |
|
|||| |
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|
| T |
51518682 |
atga |
51518679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 51518947 - 51518878
Alignment:
| Q |
2 |
aaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtaattagattagacatatcatac |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
51518947 |
aaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtgattagattagacatatcatac |
51518878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 1300205 - 1300493
Alignment:
| Q |
2 |
aaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtaattagattagacatatcatacgaacaagtaccaccagag-agaacataatt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||| | ||| | |||||||||| |||| | ||||||||| |
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| T |
1300205 |
aaattagttggatctcttctaaatgtgatatcaagatgctgcaacgattattacattagacatttattacaagcaagtaccacgagagcaaaacataatt |
1300304 |
T |
|
| Q |
101 |
ttttaattttaacgtgtgtgataccctga--atttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaagattca |
198 |
Q |
| |
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||| ||||||||| || |||||| | |||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
1300305 |
tttaaattttaacatgcatgatacttcaattatttttaaaa----------taacgaaaccattgaaaaacaatgacacttactgataagaaaaggttca |
1300394 |
T |
|
| Q |
199 |
tcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatgatga |
297 |
Q |
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||||||| |||| |||||||||| | ||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
1300395 |
tcccagtcagcagtgattgtggagaatttgcagtacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatgatga |
1300493 |
T |
|
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