View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0258_low_3 (Length: 419)
Name: NF0258_low_3
Description: NF0258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0258_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 8004828 - 8004441
Alignment:
| Q |
7 |
aaaacaacctccatggttagccatacaaacattgttaccctgatcatcgtccagacctccattgttacccagacagacctccattgttaaactcagtcat |
106 |
Q |
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| T |
8004828 |
aaaaccacctccattgttagccatacctccattgttacccagatcatcgtccagacctccattgttacccagacagacctccattgttaaactcagtcat |
8004729 |
T |
|
| Q |
107 |
caaggtaataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004728 |
caaggtaataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgt |
8004629 |
T |
|
| Q |
207 |
gatatcaagatgctgcaacagtaattagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccct |
306 |
Q |
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| T |
8004628 |
gatatcaagatgctgcaacagtgattagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccct |
8004529 |
T |
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| Q |
307 |
gaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccaataagcaatgat |
394 |
Q |
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| T |
8004528 |
gaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaaggttcatcccggtaagcaatgat |
8004441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 51519034 - 51518878
Alignment:
| Q |
94 |
taaactcagtcatcaaggtaataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggt |
193 |
Q |
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| T |
51519034 |
taaactcagtcatcgaggtaataataagagccagcattcttttgctctctgtcctttgttgattcaagtttgttgatccttgggcggaaattagttgggt |
51518935 |
T |
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| Q |
194 |
ctcttctaaatgtgatatcaagatgctgcaacagtaattagattagacatatcatac |
250 |
Q |
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| T |
51518934 |
ctcttctaaatgtgatatcaagatgctgcaacagtgattagattagacatatcatac |
51518878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 7900522 - 7900664
Alignment:
| Q |
255 |
aagtaccaccagagagaaca---taattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaat |
351 |
Q |
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| T |
7900522 |
aagtaccaccagagagaacaacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaat |
7900621 |
T |
|
| Q |
352 |
gacacttacagataagaaaagattcatcccaataagcaatgat |
394 |
Q |
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| T |
7900622 |
gacacttacagataagaaaaggttcatcccagtaagcagtgat |
7900664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 51518882 - 51518761
Alignment:
| Q |
273 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
372 |
Q |
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|||| ||||| ||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
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| Q |
373 |
attcatcccaataagcaatgat |
394 |
Q |
| |
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|||||||| | ||||||||| |
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| T |
51518782 |
gttcatcccggtcagcaatgat |
51518761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 96 - 382
Target Start/End: Original strand, 1300120 - 1300399
Alignment:
| Q |
96 |
aactcagtcatcaaggtaataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtct |
195 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||| |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||| |
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| T |
1300120 |
aacttagtcatcaaggtaataataagtcccagcaagcttttgctctctatccttggttgaatcaagtttgttgatccttgggcggaaattagttggatct |
1300219 |
T |
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| Q |
196 |
cttctaaatgtgatatcaagatgctgcaacagtaattagattagacatatcatacgaacaagtaccaccagag-agaacataattttttaattttaacgt |
294 |
Q |
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|||||||||||||||||||||||||||||| | |||| ||||||||| | ||| | |||||||||| |||| | |||||||||||| ||||||||| | |
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| T |
1300220 |
cttctaaatgtgatatcaagatgctgcaacgattattacattagacatttattacaagcaagtaccacgagagcaaaacataatttttaaattttaacat |
1300319 |
T |
|
| Q |
295 |
gtgtgatac--cctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatccca |
382 |
Q |
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| T |
1300320 |
gcatgatacttcaattatttttaaaa----------taacgaaaccattgaaaaacaatgacacttactgataagaaaaggttcatccca |
1300399 |
T |
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