View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0258_low_5 (Length: 396)

Name: NF0258_low_5
Description: NF0258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0258_low_5
NF0258_low_5
[»] chr5 (11 HSPs)
chr5 (13-367)||(9618861-9619222)
chr5 (13-123)||(19969339-19969449)
chr5 (21-134)||(1347721-1347834)
chr5 (67-134)||(19807073-19807140)
chr5 (65-129)||(20112126-20112190)
chr5 (22-116)||(13711924-13712018)
chr5 (72-133)||(17392589-17392650)
chr5 (88-133)||(27358161-27358206)
chr5 (89-133)||(19653756-19653800)
chr5 (261-301)||(19806897-19806937)
chr5 (21-133)||(26536162-26536274)
[»] chr6 (1 HSPs)
chr6 (51-123)||(16258249-16258321)
[»] scaffold0009 (3 HSPs)
scaffold0009 (61-119)||(34169-34227)
scaffold0009 (61-119)||(21922-21980)
scaffold0009 (61-119)||(40799-40857)
[»] chr3 (2 HSPs)
chr3 (51-101)||(32226768-32226818)
chr3 (58-123)||(32241837-32241902)
[»] chr1 (1 HSPs)
chr1 (72-133)||(26052813-26052874)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 9619222 - 9618861
Alignment:
Q  13 aatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtggg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619222 aatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatgttacatgttgttaaatgagatgaaacacattcaggaacatgatgtggg 9619123  T
Q  113 tatttccaatcctctttggtttctgaatcgcttgtccactgtcaatcaaaaataaaataggatttgttaaaac-------gagagaataaataaaaacca 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||    
T  9619122 tatttccaatcctctttggtttctgaatcgcttgtccactgtcaatcaaaaataaaataggatttgttaaaacggttaaagagagaataaataaaagcca 9619023  T
Q  206 ttaacactatctacggacgtgacaaacaattacctttgaaatggtaaaatcttgaagtttgggacaactttggagcattttcattacatcatcccagtca 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9619022 ttaacactatctacggacgtgacaaacaattaccttcgaaatggtaaaatcttgaggtttgggacaactttggagcattttcattacatcatcccagtca 9618923  T
Q  306 aaaaggacatgaaaaatccaatatagtcgaagtacggttaagttttcaaacacgggaatgtc 367  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9618922 aaaaggacatgaaaaatccaatatagtcgaagtactgttaagttttcaaacacgggaatgtc 9618861  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 19969339 - 19969449
Alignment:
Q  13 aatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtggg 112  Q
    ||||||| |||||||||||||||||| ||||||| || ||||||||  ||||||||||||||| | ||||||  |||||||||| |||||||||| ||||    
T  19969339 aatatacgttgcaaatcgaaaatcagcttccacagcttgatagtgtgtaatattacatgttgtaagatgagacaaaacacattcgggaacatgatatggg 19969438  T
Q  113 tatttccaatc 123  Q
    |||||||||||    
T  19969439 tatttccaatc 19969449  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 1347721 - 1347834
Alignment:
Q  21 ttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcca 120  Q
    |||||||||| ||||||| ||||||| || |||||||||  |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||| ||||    
T  1347721 ttgcaaatcggaaatcagcttccacagcttgatagtgtatgatattacatgttgtaagatgagaggaaacacattgaggaacatgatatgggtatatcca 1347820  T
Q  121 atcctctttggttt 134  Q
    |||| |||||||||    
T  1347821 atccgctttggttt 1347834  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 19807140 - 19807073
Alignment:
Q  67 acatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggttt 134  Q
    ||||||||||| || ||| | |||||||||||||||||||| ||||| ||||||||||| | ||||||    
T  19807140 acatgttgttagattagaggtaacacattcaggaacatgatatgggtgtttccaatcctttgtggttt 19807073  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 20112190 - 20112126
Alignment:
Q  65 ttacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctcttt 129  Q
    ||||||||||| | | ||||  |||||||||||||||||| || |||||||||||||| ||||||    
T  20112190 ttacatgttgtgagacgagacaaaacacattcaggaacatcatatgggtatttccaattctcttt 20112126  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 13711924 - 13712018
Alignment:
Q  22 tgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatt 116  Q
    ||||||||| ||||||| ||||||| ||  ||||| || |||   ||| |||||||||||||| ||||||| || |||||||||||  |||||||    
T  13711924 tgcaaatcggaaatcagcttccacaacttcatagtttataattcgacaagttgttaaatgagaggaaacacctttaggaacatgatcagggtatt 13712018  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 17392650 - 17392589
Alignment:
Q  72 ttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggtt 133  Q
    |||||| |||||| ||||||||||| |||||||||| ||| |||| ||||| |||| |||||    
T  17392650 ttgttagatgagacgaaacacattctggaacatgatctggatattcccaatgctctatggtt 17392589  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 27358161 - 27358206
Alignment:
Q  88 aacacattcaggaacatgatgtgggtatttccaatcctctttggtt 133  Q
    |||||| ||||||||||||| ||||||||||| ||| |||||||||    
T  27358161 aacacactcaggaacatgatctgggtatttcctatcatctttggtt 27358206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 19653756 - 19653800
Alignment:
Q  89 acacattcaggaacatgatgtgggtatttccaatcctctttggtt 133  Q
    ||||||||||||||||||  |||||||||||||||  ||||||||    
T  19653756 acacattcaggaacatgacatgggtatttccaatctgctttggtt 19653800  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 19806937 - 19806897
Alignment:
Q  261 agtttgggacaactttggagcattttcattacatcatccca 301  Q
    |||||||||||| ||||||||||||||| ||| ||||||||    
T  19806937 agtttgggacaattttggagcattttcactacctcatccca 19806897  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 26536274 - 26536162
Alignment:
Q  21 ttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcca 120  Q
    |||||||||||||||| | |||  || ||  ||||| || |||  |||||||||| | ||||||   |||||  ||||||||||||| ||||||||||||    
T  26536274 ttgcaaatcgaaaatccgcttctgcagcttcatagtttataatgctacatgttgtaagatgagacctaacactctcaggaacatgatctgggtatttcca 26536175  T
Q  121 atcctctttggtt 133  Q
    ||| | |||||||    
T  26536174 atcatgtttggtt 26536162  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 16258249 - 16258321
Alignment:
Q  51 gatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 123  Q
    |||||| |||||| || |||||||||||||| ||||||||||| ||||||||   || |||||||||||||||    
T  16258249 gatagtctaaaattttgcatgttgttaaatgggatgaaacacactcaggaaccgtatatgggtatttccaatc 16258321  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 34227 - 34169
Alignment:
Q  61 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 119  Q
    ||||||||| ||||| | ||||||||||||||||||||||| ||||| | |||||||||    
T  34227 aatattacacgttgtaagatgagatgaaacacattcaggaatatgatttcggtatttcc 34169  T

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Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 21980 - 21922
Alignment:
Q  61 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 119  Q
    |||||| |||||||| | |||||| |||||||||||||||| ||||| | |||||||||    
T  21980 aatattgcatgttgtaagatgagacgaaacacattcaggaatatgatcttggtatttcc 21922  T

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Target: scaffold0009; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 40857 - 40799
Alignment:
Q  61 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 119  Q
    |||||||  |||||| | |||||| |||||||||||||||||||||| | |||||||||    
T  40857 aatattaattgttgtaagatgagacgaaacacattcaggaacatgatcttggtatttcc 40799  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 32226818 - 32226768
Alignment:
Q  51 gatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaa 101  Q
    |||||| |||||| || |||||||||||||| |||||||||||||||||||    
T  32226818 gatagtctaaaattttgcatgttgttaaatgggatgaaacacattcaggaa 32226768  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 32241837 - 32241902
Alignment:
Q  58 taaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 123  Q
    |||||| || |||||||||||||| ||||||||||| ||||||||   || ||||| |||||||||    
T  32241837 taaaattttgcatgttgttaaatgggatgaaacacaatcaggaaccgtatatgggtgtttccaatc 32241902  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 26052813 - 26052874
Alignment:
Q  72 ttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggtt 133  Q
    |||||| |||||||||||||||||| |||||||||| ||| |||| ||||| |||| |||||    
T  26052813 ttgttagatgagatgaaacacattctggaacatgatctggatattcccaatgctctatggtt 26052874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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