View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0258_low_6 (Length: 384)

Name: NF0258_low_6
Description: NF0258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0258_low_6
NF0258_low_6
[»] chr5 (1 HSPs)
chr5 (1-351)||(42950952-42951301)
[»] chr8 (2 HSPs)
chr8 (1-351)||(2852569-2852930)
chr8 (1-351)||(2904601-2904962)
[»] chr1 (1 HSPs)
chr1 (27-93)||(1179628-1179694)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 42950952 - 42951301
Alignment:
Q  1 ctggttttgtgtacctctgtaatgttgtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatttcagtgg 100  Q
    |||||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42950952 ctggttttgtgtacctatgtaatgtagtggtgtaaatgtttg-tcatggctggatccttgtggtgccaagatatttgcatttcagattaaatttcagtgg 42951050  T
Q  101 agcgttggatttggcggctgtttttggtaacacagttggaattatcacccactgtattttgtgtatgttccaaatttacaggttttgctcagctagaacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  42951051 agcgttggatttggcggctgtttttggtaacacagttggaattatcatccactgtattttgtgtatgttctaaatttacaagttttgctcagctagaacg 42951150  T
Q  201 tgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttagcaatactggttagataaataaatttctgagttagttttgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42951151 tgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttggcaatactggttagataaataaatttctgagttagttttgt 42951250  T
Q  301 tttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42951251 tttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa 42951301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 2852569 - 2852930
Alignment:
Q  1 ctggttttgtgtacctctgtaatgttgtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatttcagtgg 100  Q
    |||||||||| ||  |||||||||| |||||||| ||||||||| | |||||||||||||||| ||   || | |   || | ||||||| |||||||||    
T  2852569 ctggttttgtatatttctgtaatgtagtggtgaagatgtttgattacggctggatccttgtggagctgggacagtct-atattagattaattttcagtgg 2852667  T
Q  101 agcgttggatttggcggctgtttttggtaacacagt--tggaattatcacccactgtattttgtgtatgttccaaatttacaggttttgctcagctagaa 198  Q
     |||||||||||||||||||||||||||||||  ||  | |||||||||| ||||||  ||| ||| ||| | |||||||||||||||||||||||||||    
T  2852668 ggcgttggatttggcggctgtttttggtaacaatgtgctagaattatcacacactgttattt-tgtttgtactaaatttacaggttttgctcagctagaa 2852766  T
Q  199 cgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttagcaatac-----------tggttagataaataaatttct 287  Q
    | |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||           |||||||| ||||||||||||    
T  2852767 cttgaattacatagtcactgcacattgagaatgtctcaactattgttacactgaactgttagcaatacttgttggcaaatggttagagaaataaatttct 2852866  T
Q  288 gagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa 351  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2852867 gtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa 2852930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 2904601 - 2904962
Alignment:
Q  1 ctggttttgtgtacctctgtaatgttgtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatttcagtgg 100  Q
    |||||||||| || |||||||| || |||||||| ||||||||| | |||||||||||||||| ||   || | |   || | ||||||| |||||||||    
T  2904601 ctggttttgtatatctctgtaacgtagtggtgaagatgtttgattacggctggatccttgtggagctgggacagtct-atattagattaactttcagtgg 2904699  T
Q  101 agcgttggatttggcggctgtttttggtaacac--agttggaattatcacccactgtattttgtgtatgttccaaatttacaggttttgctcagctagaa 198  Q
     |||||||||||||||||||||||||||||||   || | |||||||||| ||||||  ||| ||| ||| | |||||||||||||||||||||||||||    
T  2904700 ggcgttggatttggcggctgtttttggtaacaatgagctagaattatcacacactgttattt-tgtttgtactaaatttacaggttttgctcagctagaa 2904798  T
Q  199 cgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttagcaatac-----------tggttagataaataaatttct 287  Q
    | |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||           |||||||| ||||||||||||    
T  2904799 cttgaattacatagtcactgcacattgagaatgtctcaactattgttacactgaactgttagcaatacttgttggcaaatggttagagaaataaatttct 2904898  T
Q  288 gagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa 351  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2904899 gtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa 2904962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 1179628 - 1179694
Alignment:
Q  27 gtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatt 93  Q
    |||||||| |||| || |||  ||||||||||||||||||   ||||||||||||||||||||||||    
T  1179628 gtggtgaagatgtatggtcactgctggatccttgtggtgctgggatatttgcatttcagattaaatt 1179694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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