View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0258_low_8 (Length: 379)

Name: NF0258_low_8
Description: NF0258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0258_low_8
NF0258_low_8
[»] chr4 (6 HSPs)
chr4 (29-376)||(24860331-24860678)
chr4 (33-364)||(34748544-34748875)
chr4 (270-361)||(40036062-40036153)
chr4 (270-361)||(40045370-40045461)
chr4 (188-232)||(44771109-44771153)
chr4 (228-340)||(53290720-53290832)
[»] chr7 (3 HSPs)
chr7 (60-367)||(21317390-21317697)
chr7 (29-367)||(3929966-3930304)
chr7 (123-365)||(3928616-3928858)
[»] scaffold0197 (1 HSPs)
scaffold0197 (60-367)||(30828-31134)
[»] chr2 (5 HSPs)
chr2 (30-367)||(13576134-13576471)
chr2 (177-367)||(34571451-34571641)
chr2 (177-367)||(34562657-34562850)
chr2 (183-238)||(34579048-34579103)
chr2 (183-238)||(34584797-34584852)
[»] chr8 (8 HSPs)
chr8 (33-367)||(26591957-26592291)
chr8 (33-367)||(43479679-43480013)
chr8 (43-367)||(38799294-38799618)
chr8 (43-367)||(38821899-38822223)
chr8 (36-367)||(25865492-25865823)
chr8 (39-367)||(41943739-41944067)
chr8 (267-367)||(44343978-44344078)
chr8 (294-367)||(38807046-38807119)
[»] chr5 (9 HSPs)
chr5 (30-376)||(12531278-12531624)
chr5 (30-367)||(12547004-12547341)
chr5 (247-355)||(9866674-9866782)
chr5 (266-365)||(9870003-9870102)
chr5 (243-353)||(9894642-9894752)
chr5 (33-175)||(9866853-9866997)
chr5 (228-352)||(38735501-38735625)
chr5 (95-175)||(9869866-9869946)
chr5 (324-376)||(12538678-12538730)
[»] chr1 (4 HSPs)
chr1 (267-367)||(7594136-7594236)
chr1 (144-229)||(7594402-7594487)
chr1 (222-298)||(17769236-17769312)
chr1 (177-229)||(18492741-18492793)
[»] chr3 (1 HSPs)
chr3 (222-298)||(27440875-27440951)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 29 - 376
Target Start/End: Original strand, 24860331 - 24860678
Alignment:
Q  29 aggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaacc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860331 aggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaacc 24860430  T
Q  129 gtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttca 228  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860431 gttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttca 24860530  T
Q  229 aaacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctat 328  Q
    |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  24860531 aaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactctttgaagatacaaatctttgcgctat 24860630  T
Q  329 tcatgctaagagagttaccattatgcccaaggatattcatctcactcg 376  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  24860631 tcatgctaagagagttaccattatgcccaaggatattcaactcgctcg 24860678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 33 - 364
Target Start/End: Original strand, 34748544 - 34748875
Alignment:
Q  33 aaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcg 132  Q
    ||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||||| | || ||||||||||    
T  34748544 aaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccaccggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcg 34748643  T
Q  133 cacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaac 232  Q
    | || || || ||||| |||||||| || ||||| || || |||||||| ||||| || ||||| ||||| |||||||| |||||||| |||||||| ||    
T  34748644 ctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagac 34748743  T
Q  233 agatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcat 332  Q
     ||| |||||||||||||   ||| || || || || |||||||| ||||| |||||||||||||| |||||||||||||||||||| || || ||||||    
T  34748744 tgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatctcgttggtctctttgaggatactaacctctgtgccattcat 34748843  T
Q  333 gctaagagagttaccattatgcccaaggatat 364  Q
    || ||| | || || || ||||| ||||||||    
T  34748844 gccaagcgtgtcactatcatgcctaaggatat 34748875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
Q  270 caagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaagga 361  Q
    ||||| ||||||||||| ||||| ||||| ||||||||||| |||||| | || ||||| ||||| ||| ||||||| ||||||||||||||    
T  40036062 caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga 40036153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 40045370 - 40045461
Alignment:
Q  270 caagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaagga 361  Q
    ||||| |||||||| || ||||| ||||| ||||||||||| |||||| | |||||||| ||||| ||| ||||||| ||||||||||||||    
T  40045370 caagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaagga 40045461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 44771153 - 44771109
Alignment:
Q  188 tccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaac 232  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||    
T  44771153 tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaac 44771109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 53290720 - 53290832
Alignment:
Q  228 aaaacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgcta 327  Q
    ||||||||| || | ||||| || | || |||||| ||||||||| |||  | |||||||||||| |||||  | ||||| ||||||||||||||  | |    
T  53290720 aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca 53290819  T
Q  328 ttcatgctaagag 340  Q
    |||||||||||||    
T  53290820 ttcatgctaagag 53290832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 60 - 367
Target Start/End: Original strand, 21317390 - 21317697
Alignment:
Q  60 aaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaa 159  Q
    |||||||| |||||||| ||||| || ||||| ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| |    
T  21317390 aaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccaga 21317489  T
Q  160 aaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatttccgtttccagagtagcgctgt 259  Q
    | ||||| |||||||| ||  |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| || | |||||||| || |||||    
T  21317490 agagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgt 21317589  T
Q  260 ttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaag 359  Q
    ||| |||||||||||||| |||||||||||||| |||||  | ||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||    
T  21317590 ttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaag 21317689  T
Q  360 gatattca 367  Q
    ||||||||    
T  21317690 gatattca 21317697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 367
Target Start/End: Complemental strand, 3930304 - 3929966
Alignment:
Q  29 aggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaacc 128  Q
    ||||||||| ||| |||| || || || || ||||||||  | ||||| || || || ||||| || || |||||||| ||| | |||||||| |||||     
T  3930304 aggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccggtggtgtaaagaaaccacacagattccgtccaggaaca 3930205  T
Q  129 gtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttca 228  Q
    ||||||||||| || ||||||||||| || || ||||| || ||||||||  | ||||||||||||||| |  | ||||||||||||||||| |||||||    
T  3930204 gtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttca 3930105  T
Q  229 aaacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctat 328  Q
    |||| ||| | || || |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||  | ||||| ||||| || ||||| || ||    
T  3930104 aaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgccat 3930005  T
Q  329 tcatgctaagagagttaccattatgcccaaggatattca 367  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  3930004 tcatgctaagagagttactattatgccgaaggatattca 3929966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 123 - 365
Target Start/End: Complemental strand, 3928858 - 3928616
Alignment:
Q  123 ggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaag 222  Q
    ||||| |||||| | || |||||| | ||||| ||||| | ||| |||||||||||  | |||||||| ||| || |  | |||| |||||||||||| |    
T  3928858 ggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcagg 3928759  T
Q  223 atttcaaaacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttg 322  Q
    |||||||||| ||| |||| |||||||  ||||||||||| ||||||||||||   |||||||| | | | |||||  | ||||| ||||  || |||||    
T  3928758 atttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttggtttgtttgaagatatgaatctttg 3928659  T
Q  323 cgctattcatgctaagagagttaccattatgcccaaggatatt 365  Q
     ||||||||||||||||||||||| ||| |||| |||||||||    
T  3928658 tgctattcatgctaagagagttactattgtgcctaaggatatt 3928616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 60 - 367
Target Start/End: Original strand, 30828 - 31134
Alignment:
Q  60 aaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaa 159  Q
    |||||||| |||||||| ||||| || ||||| ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| |    
T  30828 aaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccaga 30927  T
Q  160 aaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatttccgtttccagagtagcgctgt 259  Q
    | ||||| |||||||| ||  ||||||||| |||||||||||| ||||||||||||||||| |||||||||||  || || | |||||||| || |||||    
T  30928 agagcactgagcttctgataagaaaacttc-attccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgt 31026  T
Q  260 ttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaag 359  Q
    ||| ||||||||||||||||||||||||||||| |||||  | ||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||    
T  31027 ttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaag 31126  T
Q  360 gatattca 367  Q
    ||||||||    
T  31127 gatattca 31134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 13576134 - 13576471
Alignment:
Q  30 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 129  Q
    |||||||||||| | || || || || ||||||||||| |||||||||||||| |||||||| ||||||||||| || || ||||||||||| |||||||    
T  13576134 ggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggccaccggaggagtgaagaagccacatcgtttccgtcctggaaccg 13576233  T
Q  130 tcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 229  Q
    |||| ||||| |||||||||||||| || || ||||| |||||||||||  | || |||||||||||| |  | ||||| ||||| ||||| ||||||||    
T  13576234 tcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaattgctcaggatttcaa 13576333  T
Q  230 aacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctatt 329  Q
    ||| ||| ||||||| || || || |||||||| ||||||||||||||||||||||||||||| |||||  | ||||||||||| || ||||| ||||||    
T  13576334 aacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacgaatctttgtgctatt 13576433  T
Q  330 catgctaagagagttaccattatgcccaaggatattca 367  Q
    ||||||||||| ||||| |||||||| |||||||||||    
T  13576434 catgctaagagggttactattatgcctaaggatattca 13576471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 34571641 - 34571451
Alignment:
Q  177 atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatttccgtttccagagtagcgctgtttccgctcttcaagaag 276  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||| || ||||| || ||||||||    || |||  ||| ||||| ||||    
T  34571641 atccgtaaacttccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaag 34571542  T
Q  277 ctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca 367  Q
    | || ||||| ||| | |||||  | ||||||||||| ||  | || || |||||||||||||| |||||||||||||| |||||||||||    
T  34571541 cagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattca 34571451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 34562850 - 34562657
Alignment:
Q  177 atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaag---atttcaaaacagatttccgtttccagagtagcgctgtttccgctcttcaag 273  Q
    ||||| || ||||||||||| ||||| ||||||||||| ||||| |   || ||||  | |||||| | |||||||||   || |||  ||| ||||| |    
T  34562850 atccgtaagcttccattccagcgtcttgttcgtgaaattgctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcagg 34562751  T
Q  274 aagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca 367  Q
    |||| || ||||| ||| | |||||  | ||||||||||| ||  | || || |||||||||||||| |||||||||||||| |||||||||||    
T  34562750 aagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattca 34562657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 34579103 - 34579048
Alignment:
Q  183 aaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagattt 238  Q
    |||||||||||||| ||||| ||||||||||| |||||  ||||||| ||||||||    
T  34579103 aaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagattt 34579048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 34584852 - 34584797
Alignment:
Q  183 aaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagattt 238  Q
    |||||||||||||| ||||| ||||||||||| |||||  ||||||| ||||||||    
T  34584852 aaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagattt 34584797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 33 - 367
Target Start/End: Original strand, 26591957 - 26592291
Alignment:
Q  33 aaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcg 132  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||| | || ||||||||||    
T  26591957 aaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgaccggcggagtgaagaagccacaccgtttcaggccaggaaccgtcg 26592056  T
Q  133 cacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaac 232  Q
    |||| || || |||||||||||||| || ||||| || |||||||| || |||||||| ||||| ||||| |||||||| || ||||| |||||||| ||    
T  26592057 cactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaggatttcaagac 26592156  T
Q  233 agatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcat 332  Q
     ||| ||||||| |||||    ||||| || || || |||||||| || || |||||||| |||||| | ||||||||||||||||| ||||||||||||    
T  26592157 ggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctattcat 26592256  T
Q  333 gctaagagagttaccattatgcccaaggatattca 367  Q
    |||||| | ||||| || ||||| |||||||||||    
T  26592257 gctaagcgtgttactatcatgcctaaggatattca 26592291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 33 - 367
Target Start/End: Complemental strand, 43480013 - 43479679
Alignment:
Q  33 aaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcg 132  Q
    ||||| |||||||| || || || || |||||||| |||||||| ||||| |||||||| ||||||||||| || ||| | |||||||| ||||| || |    
T  43480013 aaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccaccggaggagtgaagaagccacacagattccgtcctggaactgttg 43479914  T
Q  133 cacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaac 232  Q
    | ||||| || ||||||||||| || || || || |||||||||||| | || |||||||||||| |  | ||| | ||||||||||| |||||||||||    
T  43479913 ctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggttagggaaatcgctcaggatttcaaaac 43479814  T
Q  233 agatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcat 332  Q
     ||| || | |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||  | ||||| ||||||||||||||||||||||||    
T  43479813 tgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgtttgaagatactaacctttgcgctattcat 43479714  T
Q  333 gctaagagagttaccattatgcccaaggatattca 367  Q
    |||||||| ||||| |||||||| |||||||||||    
T  43479713 gctaagagggttacaattatgcctaaggatattca 43479679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 43 - 367
Target Start/End: Original strand, 38799294 - 38799618
Alignment:
Q  43 ggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcga 142  Q
    |||||||||| || || || ||||| |||||||| ||||| || ||||| ||||||||||| || ||  | ||| | || ||||| || ||  |  | ||    
T  38799294 ggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccggaggagtgaagaagccacatagattcagacctggaactgttgctttgagaga 38799393  T
Q  143 aatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatttccgt 242  Q
     ||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |  |     
T  38799394 gatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgaga 38799493  T
Q  243 ttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagag 342  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||  | ||||| |||||||| || || |||||||| || ||||||||||||||||    
T  38799494 ttccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagag 38799593  T
Q  343 ttaccattatgcccaaggatattca 367  Q
    |||| || ||||| ||||| |||||    
T  38799594 ttacaatcatgcctaaggacattca 38799618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 43 - 367
Target Start/End: Complemental strand, 38822223 - 38821899
Alignment:
Q  43 ggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcga 142  Q
    |||||||||| || || || ||||| |||||||| ||||| || ||||| ||||||||||| || ||  | ||| | || ||||| || ||  |  | ||    
T  38822223 ggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccggaggagtgaagaagccacatagattcagacctggaactgttgctttgagaga 38822124  T
Q  143 aatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatttccgt 242  Q
     ||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |  |     
T  38822123 gatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgaga 38822024  T
Q  243 ttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagag 342  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||  | ||||| |||||||| || || |||||||| || ||||||||||||||||    
T  38822023 ttccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagag 38821924  T
Q  343 ttaccattatgcccaaggatattca 367  Q
    |||| || ||||| ||||| |||||    
T  38821923 ttacaatcatgcctaaggacattca 38821899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 367
Target Start/End: Original strand, 25865492 - 25865823
Alignment:
Q  36 gcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcac 135  Q
    |||||||||||||| || || || ||||| ||  ||||||| |||||| ||||||||||||||||||| ||||| ||||  ||||| |||||||| || |    
T  25865492 gcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccaccggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctc 25865591  T
Q  136 ttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacaga 235  Q
    |||| || ||||| ||||| || || || || |||||| | ||||| || ||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||    
T  25865592 ttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacgga 25865691  T
Q  236 tttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgct 335  Q
    | |  | || ||||||   ||||||   || ||||| ||||||||||| |||||||| || ||| | ||||||||||||||  | || || |||||||||    
T  25865692 tctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgct 25865791  T
Q  336 aagagagttaccattatgcccaaggatattca 367  Q
    ||||| || || |||||||| |||||||||||    
T  25865792 aagagggtaacgattatgccaaaggatattca 25865823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 367
Target Start/End: Original strand, 41943739 - 41944067
Alignment:
Q  39 ccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttc 138  Q
    ||||||||||| || || || || || || || ||||| |||||  | ||||| ||||| ||||||||||| || |  ||||| || ||||| |||||||    
T  41943739 ccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaaccggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttc 41943838  T
Q  139 gcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagattt 238  Q
    | || ||||| || ||||| || || || || ||| | ||||| || ||||||||||||||||| ||||||||||| |||||||||||||| || ||| |    
T  41943839 gtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatct 41943938  T
Q  239 ccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaag 338  Q
    | | ||||||||    ||||||   || ||||| ||||| || ||||||||||| |||||| | ||||||||||| ||  | || || ||||||||||||    
T  41943939 cagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaag 41944038  T
Q  339 agagttaccattatgcccaaggatattca 367  Q
    || ||||| |||||||| ||||| |||||    
T  41944039 agggttacaattatgccaaaggacattca 41944067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 367
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
Q  267 cttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattc 366  Q
    ||||| ||||| ||||| ||||||||||| ||| | ||||||||||| ||  | || ||||||||||||||||| || || |||||||||||||||||||    
T  44343978 cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc 44344077  T
Q  367 a 367  Q
    |    
T  44344078 a 44344078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 38807046 - 38807119
Alignment:
Q  294 gttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca 367  Q
    ||||| ||||||||||| || || |  ||||| |||||||||||||||||||| || ||||| ||||| |||||    
T  38807046 gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattca 38807119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 30 - 376
Target Start/End: Original strand, 12531278 - 12531624
Alignment:
Q  30 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 129  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| ||||| || ||| | |||||||| ||||| |    
T  12531278 ggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaagccacacagattccgtccaggaactg 12531377  T
Q  130 tcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 229  Q
    | |||||||| || |||||||||||||| || ||||| |||||||| ||  | || |||||||||||  | || ||||||||||||||||||||||||||    
T  12531378 ttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaagatttcaa 12531477  T
Q  230 aacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctatt 329  Q
    ||||||| |||| ||||| || || |||||||| ||||||||||||||||||||||||||||| |||||  | ||||| |||||||| || || || |||    
T  12531478 aacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccatt 12531577  T
Q  330 catgctaagagagttaccattatgcccaaggatattcatctcactcg 376  Q
    ||||||||||| ||||| || ||||| ||||||||||| ||| ||||    
T  12531578 catgctaagagggttactatcatgcctaaggatattcaactcgctcg 12531624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 367
Target Start/End: Complemental strand, 12547341 - 12547004
Alignment:
Q  30 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 129  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| ||||| || ||| | |||||||| ||||| |    
T  12547341 ggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaagccacacagattccgtccaggaactg 12547242  T
Q  130 tcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 229  Q
    | |||||||| || |||||||||||||| || ||||| |||||||| ||  | || |||||||||||  | || ||||||||||||||||||||||||||    
T  12547241 ttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaagatttcaa 12547142  T
Q  230 aacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctatt 329  Q
    ||||||| |||| ||||| || || |||||||| ||||||||||||||||||||||||||||| |||||  | ||||| |||||||| || || || |||    
T  12547141 aacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccatt 12547042  T
Q  330 catgctaagagagttaccattatgcccaaggatattca 367  Q
    ||||||||||| ||||| || ||||| |||||||||||    
T  12547041 catgctaagagggttactatcatgcctaaggatattca 12547004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 355
Target Start/End: Complemental strand, 9866782 - 9866674
Alignment:
Q  247 agagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttac 346  Q
    ||||||| | |||||| |||||||||||||||||| |||  ||||| |||||  | ||||| |||||||||||||| |||||||||||||||||||||||    
T  9866782 agagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttac 9866683  T
Q  347 cattatgcc 355  Q
     ||||||||    
T  9866682 tattatgcc 9866674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 9870003 - 9870102
Alignment:
Q  266 tcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatatt 365  Q
    |||||||||||||| |||||||||| | |||||  | ||| | |||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  9870003 tcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt 9870102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 9894642 - 9894752
Alignment:
Q  243 ttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagag 342  Q
    ||||||||||| |||||||| ||| ||||||||| || |||||||| | | ||| |  | ||||| ||||||||  |||||||||||||||||||| |||    
T  9894642 ttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgag 9894741  T
Q  343 ttaccattatg 353  Q
    |||| ||||||    
T  9894742 ttactattatg 9894752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 9866997 - 9866853
Alignment:
Q  33 aaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcg 132  Q
    ||||||||| | ||| |||| || |||||||| || |||||||| ||||| || || || ||||||||||| || |||||||||||||| |||||||| |    
T  9866997 aaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacgggaggagtgaagaagccacaccgtttccgtcctggaaccgttg 9866898  T
Q  133 cacttcgcgaaatccgca--agtaccaaaaaagcacagagcttct 175  Q
    | ||||| || ||||| |  |||||||||| ||||  ||||||||    
T  9866897 cgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct 9866853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 352
Target Start/End: Original strand, 38735501 - 38735625
Alignment:
Q  228 aaaacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgcta 327  Q
    ||||||||| || | ||||| || | ||||||||| ||||||||| |||    ||||| |||||| |||||  | ||||| ||||||||||||||  |||    
T  38735501 aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta 38735600  T
Q  328 ttcatgctaagagagttaccattat 352  Q
    ||||||||||||| ||||| |||||    
T  38735601 ttcatgctaagagggttacaattat 38735625  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 9869866 - 9869946
Alignment:
Q  95 agtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttct 175  Q
    |||||||||||| ||| ||||| |||  |||||||| || ||||| || ||||| |||||||| || ||||| ||||||||    
T  9869866 agtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttct 9869946  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 12538678 - 12538730
Alignment:
Q  324 gctattcatgctaagagagttaccattatgcccaaggatattcatctcactcg 376  Q
    ||||||||||||||||||||||| || ||||| || | |||||| ||||||||    
T  12538678 gctattcatgctaagagagttactatcatgcctaaaggtattcaactcactcg 12538730  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 7594236 - 7594136
Alignment:
Q  267 cttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattc 366  Q
    ||||| ||||| ||||| ||||| || |||||| | |||||||| || || || || || |||||||||||||| || || |||||||| ||||||||||    
T  7594236 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 7594137  T
Q  367 a 367  Q
    |    
T  7594136 a 7594136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 7594487 - 7594402
Alignment:
Q  144 atccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 229  Q
    ||||| |||||||| || || || |||||| | ||||| || |||||||| || ||||| || |||||||| ||||||||||||||    
T  7594487 atccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa 7594402  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 17769312 - 17769236
Alignment:
Q  222 gatttcaaaacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttgg 298  Q
    ||||||||||||||| |||| ||  |||||||  ||||||| ||||||||||||||   || ||||||||| |||||    
T  17769312 gatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttgg 17769236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 18492741 - 18492793
Alignment:
Q  177 atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 229  Q
    ||||| ||||||||||||||  |||| |||||||||||  |||||||||||||    
T  18492741 atccgtaaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaa 18492793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 27440875 - 27440951
Alignment:
Q  222 gatttcaaaacagatttccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttgg 298  Q
    ||||||||||||||| |||| ||  ||||||||  |||||| ||||||||||||||   || ||||||||| |||||    
T  27440875 gatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttgg 27440951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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