View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0259_low_2 (Length: 457)
Name: NF0259_low_2
Description: NF0259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0259_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 30 - 444
Target Start/End: Complemental strand, 44263877 - 44263462
Alignment:
| Q |
30 |
ttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatgaaagaaacttgcttttagt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44263877 |
ttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatggaagaaacttgcttttagt |
44263778 |
T |
|
| Q |
130 |
aaaagcatcggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaacacctatggacatgaaaactagtactgtgg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44263777 |
aaaagcatcggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaacacctatggacatgaaaactagtactgtgg |
44263678 |
T |
|
| Q |
230 |
tcaaaagtaggactcctcataagtggagaaaatctatgtcctgatagagaggctttcaatgttaa-taacaaaatnnnnnnnttaaggtgtcatataagt |
328 |
Q |
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| T |
44263677 |
tcaaaagtaggactcctcataagtggagaaaatctatgtcctgatagagaggctttcattgttaaataaaaaaataaaaaaattaaggtgtcatataagt |
44263578 |
T |
|
| Q |
329 |
gtttattggagttaagaatttggaaatgatgtaagatagagacatattttggaataaattcaataaagatgtgggggtacaacttggactacataactca |
428 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44263577 |
gtttattggagataagaatttggaaatgatgtaagatagagacatattttggaataaattcaataaagatgtgggggtacaacttggactgcataactca |
44263478 |
T |
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| Q |
429 |
actttgtatgcaacag |
444 |
Q |
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| T |
44263477 |
gctttgtatgcaacag |
44263462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 413
Target Start/End: Complemental strand, 44260823 - 44260686
Alignment:
| Q |
279 |
aggctttcaatgttaataacaaaatnnnnnnnttaaggtgtcatataagtgtttattggagtta---agaatttggaaatgatgtaagatagagacatat |
375 |
Q |
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||||||||| ||||||||||||||| ||||| ||| ||||| ||||||||||||||| ||| ||||||||| ||||||||||| ||| || |
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| T |
44260823 |
aggctttcattgttaataacaaaataaaaaa-ttaagttgttgtataactgtttattggagttataaagactttggaaataatgtaagatagtgacctac |
44260725 |
T |
|
| Q |
376 |
tttggaataaattcaataaagatgtggggg-tacaactt |
413 |
Q |
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|||||||||| ||||||||||||| ||||| |||||||| |
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| T |
44260724 |
tttggaataacttcaataaagatgcgggggatacaactt |
44260686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 56165615 - 56165443
Alignment:
| Q |
30 |
ttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatgaaagaaacttgcttttagt |
129 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
56165615 |
ttacaggctgcaaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaagaaacttgcttttagt |
56165516 |
T |
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| Q |
130 |
aaaagcat---cggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaa |
199 |
Q |
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|||||||| || ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
56165515 |
aaaagcattggtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaa |
56165443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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