View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0259_low_21 (Length: 225)

Name: NF0259_low_21
Description: NF0259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0259_low_21
NF0259_low_21
[»] chr4 (2 HSPs)
chr4 (71-155)||(37993637-37993721)
chr4 (73-155)||(38013166-38013248)
[»] chr2 (1 HSPs)
chr2 (90-131)||(25326075-25326116)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 37993637 - 37993721
Alignment:
Q  71 atcatcaacaatgaagtttccctcatgcatattacttctcctcctaatactaaccacacatcttttcattccttcactctcagaa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37993637 atcatcaacaatgaagtttccctcatgcatattacttctcctcctaatcctaaccacacatcttttcattccttcactctcagaa 37993721  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 38013166 - 38013248
Alignment:
Q  73 catcaacaatgaagtttccctcatgcatattacttctcctcctaatactaaccacacatcttttcattccttcactctcagaa 155  Q
    ||||||| ||||| ||  ||||||||||||  ||||| ||| |||| ||||||||| |||  ||||||||||||| |||||||    
T  38013166 catcaaccatgaacttcacctcatgcatataccttctactcataatcctaaccacaaatcacttcattccttcacactcagaa 38013248  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 25326075 - 25326116
Alignment:
Q  90 ccctcatgcatattacttctcctcctaatactaaccacacat 131  Q
    |||||||||||||| |||||||||||||  ||||||||||||    
T  25326075 ccctcatgcatattccttctcctcctaaccctaaccacacat 25326116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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