View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0259_low_24 (Length: 216)

Name: NF0259_low_24
Description: NF0259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0259_low_24
NF0259_low_24
[»] chr1 (8 HSPs)
chr1 (74-216)||(52596309-52596452)
chr1 (136-201)||(22593697-22593762)
chr1 (96-165)||(11337429-11337497)
chr1 (96-165)||(11495448-11495516)
chr1 (147-201)||(15188630-15188684)
chr1 (118-172)||(28736286-28736340)
chr1 (129-209)||(2774203-2774283)
chr1 (82-166)||(21516745-21516829)
[»] chr8 (7 HSPs)
chr8 (105-209)||(32467813-32467917)
chr8 (129-208)||(35764540-35764619)
chr8 (84-151)||(21367297-21367365)
chr8 (129-207)||(41470034-41470112)
chr8 (129-214)||(14354569-14354654)
chr8 (83-212)||(24925317-24925446)
chr8 (129-209)||(24523876-24523955)
[»] chr2 (11 HSPs)
chr2 (83-214)||(27678975-27679106)
chr2 (106-216)||(42139310-42139420)
chr2 (83-176)||(44809944-44810037)
chr2 (94-214)||(38808979-38809100)
chr2 (122-206)||(15967753-15967837)
chr2 (108-180)||(18491516-18491588)
chr2 (84-155)||(35189206-35189277)
chr2 (112-177)||(15804359-15804424)
chr2 (104-151)||(25727140-25727187)
chr2 (104-150)||(17489908-17489954)
chr2 (124-209)||(13463323-13463408)
[»] chr3 (11 HSPs)
chr3 (111-209)||(37083777-37083875)
chr3 (84-216)||(9198229-9198361)
chr3 (106-180)||(11041915-11041989)
chr3 (82-144)||(32582350-32582411)
chr3 (109-213)||(32109443-32109547)
chr3 (146-209)||(32326195-32326258)
chr3 (96-152)||(25290320-25290376)
chr3 (97-144)||(33674623-33674670)
chr3 (129-180)||(44560132-44560183)
chr3 (106-176)||(32117764-32117834)
chr3 (148-214)||(38684808-38684874)
[»] chr5 (14 HSPs)
chr5 (90-176)||(31811987-31812073)
chr5 (113-209)||(22028640-22028736)
chr5 (106-199)||(29226455-29226548)
chr5 (96-180)||(31806802-31806886)
chr5 (85-180)||(13838935-13839029)
chr5 (127-214)||(16869989-16870076)
chr5 (99-209)||(6462443-6462561)
chr5 (134-205)||(3540780-3540851)
chr5 (129-180)||(28363382-28363433)
chr5 (108-177)||(17259379-17259447)
chr5 (129-209)||(2941875-2941954)
chr5 (96-175)||(32046782-32046860)
chr5 (148-209)||(4283067-4283128)
chr5 (96-144)||(6035758-6035806)
[»] chr7 (2 HSPs)
chr7 (114-208)||(12473544-12473638)
chr7 (107-178)||(42967689-42967760)
[»] chr4 (11 HSPs)
chr4 (98-203)||(20988868-20988974)
chr4 (104-201)||(23051720-23051817)
chr4 (83-171)||(44555780-44555868)
chr4 (83-155)||(30071594-30071666)
chr4 (140-206)||(21501576-21501642)
chr4 (129-214)||(1162165-1162250)
chr4 (112-180)||(39033490-39033558)
chr4 (115-166)||(50130922-50130973)
chr4 (129-163)||(24474050-24474084)
chr4 (112-152)||(30070077-30070117)
chr4 (112-180)||(41963462-41963530)
[»] chr6 (3 HSPs)
chr6 (81-209)||(9195403-9195531)
chr6 (83-151)||(29052146-29052214)
chr6 (147-208)||(2255202-2255263)
[»] scaffold0040 (1 HSPs)
scaffold0040 (118-216)||(49941-50039)
[»] scaffold0536 (1 HSPs)
scaffold0536 (87-152)||(4295-4360)
[»] scaffold0010 (1 HSPs)
scaffold0010 (129-214)||(166540-166625)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 52596452 - 52596309
Alignment:
Q  74 ataatactatagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaa-aaaagacctgtttggtaaccgtca 172  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52596452 ataatactatagggtctgtttggtaagacatgtttttgagcttatagataatgtgttataagctcatttgattaaaaaaagacctgtttggtaaccgtca 52596353  T
Q  173 ctttctcaggaactattagcttatttttactagcttaaagcggt 216  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  52596352 ttttctcaggaactattagcttatttttactagcttaaagcggt 52596309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 22593762 - 22593697
Alignment:
Q  136 ctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttattttta 201  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||| || |   |||||||||||||    
T  22593762 ctcattttattaaaaaagaccagtttggtaaccgtcactttctcacgagcctgtagcttattttta 22593697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 11337497 - 11337429
Alignment:
Q  96 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggta 165  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| | | |||| |||||||||||||    
T  11337497 gtaagacttatttttgagcttatagcttatgtcttataagctcatttaact-aaaacgacctgtttggta 11337429  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 11495516 - 11495448
Alignment:
Q  96 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggta 165  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| | | |||| |||||||||||||    
T  11495516 gtaagacttatttttgagcttatagcttatgtcttataagctcatttaact-aaaacgacctgtttggta 11495448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 15188684 - 15188630
Alignment:
Q  147 aaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttattttta 201  Q
    |||||| ||||||||||||| | ||||||||||| || ||| |||||||||||||    
T  15188684 aaaaaaaacctgtttggtaatcatcactttctcatgagctaatagcttattttta 15188630  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 28736340 - 28736286
Alignment:
Q  118 tagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtca 172  Q
    ||||| |||| |||||||||||||||| ||||||||||| |  ||||||||||||    
T  28736340 tagcttatgtcttataagctcatttgactaaaaaagaccagcctggtaaccgtca 28736286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 2774203 - 2774283
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 209  Q
    |||||||||||| ||| ||||||||||   |||||||||||||  ||| ||| || ||  || ||||||||||||||||||    
T  2774203 ttataagctcatatgactaaaaaagactcatttggtaaccgtctttttttcatgagcttataacttatttttactagctta 2774283  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 21516829 - 21516745
Alignment:
Q  82 atagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaa 166  Q
    ||||||| ||||| ||||||||  | ||||||||||| ||| ||   |||||||||| | ||| |||||||||| ||||||||||    
T  21516829 atagggtctgtttggtaagacacatatttgagcttatggcttatagcttataagctcgtatgactaaaaaagacatgtttggtaa 21516745  T

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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 32467917 - 32467813
Alignment:
Q  105 gtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttacta 204  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||  || ||  ||||||||||||||||    
T  32467917 gtttttgagcttatagcttatgtcttataagctcatttgactaaaaaagacctgattggtaaccgtcacttcctcgtgagcttatagcttatttttacta 32467818  T
Q  205 gctta 209  Q
    |||||    
T  32467817 gctta 32467813  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 35764540 - 35764619
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctt 208  Q
    |||||||||||||| |||||||||||| ||| |||||||| ||||||||| | || ||  |||||||||||||| |||||    
T  35764540 ttataagctcatttaattaaaaaagacatgtctggtaaccatcactttcttatgagcttatagcttatttttacaagctt 35764619  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 21367365 - 21367297
Alignment:
Q  84 agggtttgtttagtaagaca-tgtttttgagcttatagctaatgtgttataagctcatttgattaaaaa 151  Q
    ||||||||||| | |||||| | ||||||||||||||||| |||| |||||||||| | ||||||||||    
T  21367365 agggtttgtttggcaagacactttttttgagcttatagctgatgtcttataagctcgtatgattaaaaa 21367297  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 41470034 - 41470112
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagct 207  Q
    |||||||||||| | | ||||||||||| |||||||||| |||| ||||||| || ||  || |||| |||||||||||    
T  41470034 ttataagctcatataactaaaaaagacccgtttggtaactgtcattttctcacgagcttataacttaattttactagct 41470112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 14354654 - 14354569
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 214  Q
    |||||||||||| ||| |||||||||||  ||||||||| |||  |||||   || ||| ||| ||||||||||||||||| ||||    
T  14354654 ttataagctcatatgactaaaaaagacccatttggtaacagtcgttttctgtcgagctaatagtttatttttactagcttatagcg 14354569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 24925317 - 24925446
Alignment:
Q  83 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcagg 182  Q
    |||||| ||||| |||||||||| ||||||| |||||  | || | |||||| ||||||||| |||||||  | |||||| |||  |||||||| | |      
T  24925317 tagggtctgtttggtaagacatgattttgagtttataatttatatcttataaactcatttgactaaaaaaaccttgtttgataagagtcactttattaca 24925416  T
Q  183 aactattagcttatttttactagcttaaag 212  Q
    ||||  || ||||||||||||| |||||||    
T  24925417 aacttataacttatttttactaacttaaag 24925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 24523955 - 24523876
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 209  Q
    ||||||| ||||||||||||||| |||  ||||| ||||||||||||||| |  | ||  || ||||||||||||||||||    
T  24523955 ttataagttcatttgattaaaaa-gactagtttgctaaccgtcactttctaacaagcttataacttatttttactagctta 24523876  T

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Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 27678975 - 27679106
Alignment:
Q  83 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcagg 182  Q
    |||||| ||||| | ||||||| ||||||||||||||||| |||| ||||||||||||||||  ||||||||||||||   |||| ||||| |||||| |    
T  27678975 tagggtgtgtttggcaagacatatttttgagcttatagcttatgtcttataagctcatttgagcaaaaaagacctgttcaataacggtcacattctcacg 27679074  T
Q  183 aactattagcttatttttactagcttaaagcg 214  Q
    | ||  ||||||||||||||||||||| ||||    
T  27679075 agcttatagcttatttttactagcttatagcg 27679106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 42139310 - 42139420
Alignment:
Q  106 tttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactag 205  Q
    |||||||||||| |||| |||| |||||||||||||||| ||||||| || ||||||||||  ||||||||||||  | ||  ||||||||||||| |||    
T  42139310 tttttgagcttaaagcttatgtcttataagctcatttgactaaaaaatacatgtttggtaattgtcactttctcacaagcttatagcttatttttattag 42139409  T
Q  206 cttaaagcggt 216  Q
    |||| ||||||    
T  42139410 cttatagcggt 42139420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 44810037 - 44809944
Alignment:
Q  83 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcacttt 176  Q
    |||||| ||||| ||||| |||||||| |||||||||||  |||| |||||||||||||||| |||||||| || |||||||||  ||||||||    
T  44810037 tagggtctgtttggtaaggcatgttttcgagcttatagcctatgtcttataagctcatttgactaaaaaaggccggtttggtaatggtcacttt 44809944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 38809100 - 38808979
Alignment:
Q  94 tagtaagacatgtttttgagctta-tagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagc 192  Q
    |||||| ||||  ||||||||||| ||||| |||| ||||||||| | |||  | |||||||||||||||||||| ||||||||||||  | ||  ||||    
T  38809100 tagtaatacataattttgagcttaatagcttatgtcttataagcttaattggatgaaaaagacctgtttggtaactgtcactttctcacaagcttatagc 38809001  T
Q  193 ttatttttactagcttaaagcg 214  Q
    ||| ||||||||||||| ||||    
T  38809000 ttaattttactagcttatagcg 38808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 15967753 - 15967837
Alignment:
Q  122 taatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagc 206  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||  |||||||||| |  | ||  ||||||||||||||||||    
T  15967753 taatgtcttataagctcatttgactaaaaaagacccgtttggtaaatgtcactttcttataagcttatagcttatttttactagc 15967837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 18491516 - 18491588
Alignment:
Q  108 tttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 180  Q
    |||||| |||||||| |||| |||||||||||||||| |||| |||||| | ||||||||||||| |||||||    
T  18491516 tttgagtttatagcttatgtcttataagctcatttgactaaacaagacccgattggtaaccgtcattttctca 18491588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 35189206 - 35189277
Alignment:
Q  84 agggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagac 155  Q
    ||||| ||||| ||||||||| ||| |||||||||  || |||| || ||||||||||||||||||||||||    
T  35189206 agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagac 35189277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 15804359 - 15804424
Alignment:
Q  112 agcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttc 177  Q
    ||||||||| | |||| ||||| |||||||||| ||||||||||| |||||||||  |||||||||    
T  15804359 agcttatagtttatgtcttataggctcatttgactaaaaaagaccagtttggtaattgtcactttc 15804424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 25727187 - 25727140
Alignment:
Q  104 tgtttttgagcttatagctaatgtgttataagctcatttgattaaaaa 151  Q
    |||||||||||||||| || |||| |||||||||||||||| ||||||    
T  25727187 tgtttttgagcttataacttatgttttataagctcatttgactaaaaa 25727140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 17489954 - 17489908
Alignment:
Q  104 tgtttttgagcttatagctaatgtgttataagctcatttgattaaaa 150  Q
    ||||||||||||||||||| || | |||||||||||||||| |||||    
T  17489954 tgtttttgagcttatagcttatatcttataagctcatttgactaaaa 17489908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 13463323 - 13463408
Alignment:
Q  124 atgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 209  Q
    |||| |||||||||| ||||| |||||| |||| ||||  ||| |||||||||||||  ||||  ||||||||| |||||| ||||    
T  13463323 atgtcttataagctcgtttgaataaaaaggacccgtttaataaacgtcactttctcacaaacttatagcttattcttactatctta 13463408  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 37083777 - 37083875
Alignment:
Q  111 gagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 209  Q
    |||||||||||| |||| |||||||||||||||||||||||||||  ||| |||||| |||||||||||| || ||  |||||||||||||||||||||    
T  37083777 gagcttatagcttatgtcttataagctcatttgattaaaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactagctta 37083875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 9198361 - 9198229
Alignment:
Q  84 agggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcagga 183  Q
    ||||| ||||| || ||| || ||||||||||||||||| || |  | ||||||| ||| | ||||||||||| |||| |||||||||||||||||| ||    
T  9198361 agggtctgtttggttagaaatatttttgagcttatagcttatatcctttaagctctttttactaaaaaagacccgtttagtaaccgtcactttctcacga 9198262  T
Q  184 actattagcttatttttactagcttaaagcggt 216  Q
     ||   |||||||||||||||||||| ||||||    
T  9198261 gcttaaagcttatttttactagcttatagcggt 9198229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 11041915 - 11041989
Alignment:
Q  106 tttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 180  Q
    ||||||| ||||||||| |||| |||||||||||||||| ||||||| | ||||||  |||| ||||||||||||    
T  11041915 tttttgaacttatagcttatgtcttataagctcatttgactaaaaaaaaactgtttcataacagtcactttctca 11041989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 32582350 - 32582411
Alignment:
Q  82 atagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttga 144  Q
    ||||||| ||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  32582350 atagggtctgtttggtaagacatgtttttga-cttatagcttatgtcttataagctcatttga 32582411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 32109443 - 32109547
Alignment:
Q  109 ttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctt 208  Q
    |||||||||||||| ||||  |||| |||||||||| |  ||||||| |||||| |||| ||||||||| || || ||  |||||||||||||  |||||    
T  32109443 ttgagcttatagcttatgtcctatatgctcatttgactcgaaaagacatgtttgataactgtcactttcccatgagcttatagcttatttttaaaagctt 32109542  T
Q  209 aaagc 213  Q
    |||||    
T  32109543 aaagc 32109547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 32326258 - 32326195
Alignment:
Q  146 taaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 209  Q
    ||||||||||| |||||||| ||||||||||||||  | ||  |||||||||||||||||||||    
T  32326258 taaaaaagacccgtttggtatccgtcactttctcacaagcttgtagcttatttttactagctta 32326195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 25290376 - 25290320
Alignment:
Q  96 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaa 152  Q
    |||||||||  |||||||||||||||| |||| ||||| |||||||||| |||||||    
T  25290376 gtaagacataattttgagcttatagcttatgtcttatatgctcatttgactaaaaaa 25290320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 33674670 - 33674623
Alignment:
Q  97 taagacatgtttttgagcttatagctaatgtgttataagctcatttga 144  Q
    ||||||||||||||||||||||| || |||| || |||||||||||||    
T  33674670 taagacatgtttttgagcttataccttatgtcttgtaagctcatttga 33674623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 44560132 - 44560183
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 180  Q
    ||||||| |||| ||| |||||||||| |||||||||||||||| |||||||    
T  44560132 ttataagttcatatgactaaaaaagacatgtttggtaaccgtcattttctca 44560183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 32117764 - 32117834
Alignment:
Q  106 tttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcacttt 176  Q
    ||||||||| ||||||| ||||  ||||||||||||| | || |||||||| | || ||||||||||||||    
T  32117764 tttttgagcatatagcttatgtcctataagctcatttaactagaaaagacccgctttgtaaccgtcacttt 32117834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 38684874 - 38684808
Alignment:
Q  148 aaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 214  Q
    ||||||| | ||||||||||||||| |||||||||| ||  ||  ||||||||||||||||| ||||    
T  38684874 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcg 38684808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 31811987 - 31812073
Alignment:
Q  90 tgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcacttt 176  Q
    ||||| ||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  31811987 tgtttggtaagacatgttttttagcttatagcttatgtcttataagctcatttgactaaaacagacccgtttggtaaccttcacttt 31812073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 22028640 - 22028736
Alignment:
Q  113 gcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 209  Q
    ||||||||||  ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||  | ||  |||||||||||||||| ||||    
T  22028640 gcttatagcttttgtcttataagctcatttgactaaaaaagacccgtttggtaaccgtcactttctcacaagcttatagcttatttttactaactta 22028736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 29226548 - 29226455
Alignment:
Q  106 tttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttt 199  Q
    ||||||||||||||||  |||| |||||  ||||||||| |||||||||| |||||| ||||||||||||||||| ||| |  |||||||||||    
T  29226548 tttttgagcttatagcatatgtcttatatactcatttgactaaaaaagacatgtttgataaccgtcactttctcatgaagtcatagcttatttt 29226455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 31806886 - 31806802
Alignment:
Q  96 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 180  Q
    |||||||||  |||||||||| ||||| |||| ||||| |||||||| ||| |||||||| |||||||||||| ||| |||||||    
T  31806886 gtaagacataattttgagcttctagcttatgtcttatatgctcattttatttaaaaagacatgtttggtaaccatcaatttctca 31806802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 13839029 - 13838935
Alignment:
Q  85 gggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 180  Q
    |||| ||||| ||| |||||||||||||||||| || | || | |||||||||||||||| ||||||| ||| |||| ||||| ||||||||||||    
T  13839029 gggtatgtttggtatgacatgtttttgagcttacagtttatctcttataagctcatttgactaaaaaaaacccgttt-gtaactgtcactttctca 13838935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 16870076 - 16869989
Alignment:
Q  127 tgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 214  Q
    |||||| ||||||||||| ||||||| |||| ||||||| |  ||||||||||| |||||  || |||||||||||||||||| ||||    
T  16870076 tgttattagctcatttgactaaaaaatacctttttggtatctatcactttctcacgaacttataccttatttttactagcttatagcg 16869989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 6462561 - 6462443
Alignment:
Q  99 agacatgtttttgagcttatagcta-------atgtgttataa-gctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactatta 190  Q
    |||||||||||||||||||||||||       |||| |||||| |||||||||| ||||||||| |  |||||||||||| ||||||||   | ||  ||    
T  6462561 agacatgtttttgagcttatagctattagcttatgtcttataaagctcatttgactaaaaaagaaccatttggtaaccgttactttctcgcaagcttata 6462462  T
Q  191 gcttatttttactagctta 209  Q
    |||||||||||||||||||    
T  6462461 gcttatttttactagctta 6462443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 3540851 - 3540780
Alignment:
Q  134 agctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactag 205  Q
    ||||||||||||||||||| || ||||||||||||| |||||| ||| |||||  ||  |||||||||||||    
T  3540851 agctcatttgattaaaaaaaacttgtttggtaaccgccactttatcacgaacttataatttatttttactag 3540780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 28363382 - 28363433
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 180  Q
    |||||||||||||||| || ||||||| ||||||| ||||||||||||||||    
T  28363382 ttataagctcatttgactataaaagacttgtttggcaaccgtcactttctca 28363433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 17259379 - 17259447
Alignment:
Q  108 tttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttc 177  Q
    ||||||||||||||| |||| ||||||||||| |||  | ||||||||| |||||||||||||| |||||    
T  17259379 tttgagcttatagcttatgtcttataagctcaattggct-aaaaagacccgtttggtaaccgtcgctttc 17259447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 2941875 - 2941954
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 209  Q
    |||||||||||||||| ||||||| ||| |||||||||||| || ||| ||| || |   |||||||||||||||||||||    
T  2941875 ttataagctcatttgactaaaaaacacccgtttggtaaccgcca-tttgtcatgagcatatagcttatttttactagctta 2941954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 32046782 - 32046860
Alignment:
Q  96 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactt 175  Q
    |||||||||  || ||||||||||||| |||||||| ||||||||| || ||||||| | || |||||||||||| ||||    
T  32046782 gtaagacataattctgagcttatagcttatgtgttaaaagctcattagactaaaaaata-ctctttggtaaccgtgactt 32046860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 4283067 - 4283128
Alignment:
Q  148 aaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 209  Q
    |||||||| |||||||||||||||| | ||||| || ||  ||||||||||||||| |||||    
T  4283067 aaaaagacatgtttggtaaccgtcattctctcacgagcttatagcttatttttactggctta 4283128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 6035758 - 6035806
Alignment:
Q  96 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttga 144  Q
    ||||||||| |||||||||||| |||| |||  ||||||||||||||||    
T  6035758 gtaagacatatttttgagcttacagcttatgacttataagctcatttga 6035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 12473638 - 12473544
Alignment:
Q  114 cttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctt 208  Q
    ||||||||| |||  |||||||||||||||| ||||||||||| ||||||||||||| | ||||||| || ||  ||||||||||||||||||||    
T  12473638 cttatagcttatggcttataagctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgagcttatagcttatttttactagctt 12473544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 42967689 - 42967760
Alignment:
Q  107 ttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttct 178  Q
    |||| |||||||| || |||| |||||||  |||||||||||||| |||| ||||||||||  |||||||||    
T  42967689 tttttagcttataacttatgtcttataagtccatttgattaaaaatgacccgtttggtaacaatcactttct 42967760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 20988974 - 20988868
Alignment:
Q  98 aagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactat-tagcttat 196  Q
    |||||| ||| ||| ||||||| || |||| |||||||||||||||| ||||||||||  ||||||||||||||||||||||| || || | ||||||||    
T  20988974 aagacacgttcttgcgcttataacttatgtcttataagctcatttgactaaaaaagacacgtttggtaaccgtcactttctcatgagctttatagcttat 20988875  T
Q  197 ttttact 203  Q
    |||||||    
T  20988874 ttttact 20988868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 23051817 - 23051720
Alignment:
Q  104 tgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttattttta 201  Q
    ||||||||||||||||| | |||| |||||||| ||||||| |||||| ||||||||||||||| |||||||||||| || ||   ||||||||||||    
T  23051817 tgtttttgagcttatagtttatgtcttataagcccatttgactaaaaaggacctgtttggtaacagtcactttctcacgagcttacagcttattttta 23051720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 44555868 - 44555780
Alignment:
Q  83 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtc 171  Q
    |||||| ||||| |||||||||  |||||||||||||||| |||| || ||||||||||||| |||| |||||| ||||||||||||||    
T  44555868 tagggtctgtttggtaagacataattttgagcttatagcttatgtcttttaagctcatttgactaaataagacccgtttggtaaccgtc 44555780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 30071666 - 30071594
Alignment:
Q  83 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagac 155  Q
    |||||| ||||| |||||||||||||||||| |||||||| ||||  ||||||||||||||  ||||||||||    
T  30071666 tagggtctgtttggtaagacatgtttttgagtttatagcttatgtcatataagctcatttggctaaaaaagac 30071594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 21501576 - 21501642
Alignment:
Q  140 tttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagc 206  Q
    ||||| |||||||||| | ||||||||| |||||||||||| || ||  ||||||||||||||||||    
T  21501576 tttgactaaaaaagacatatttggtaactgtcactttctcacgagcttatagcttatttttactagc 21501642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 1162165 - 1162250
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 214  Q
    |||||||||| ||||| |||||| |||| ||||  ||| ||||||||||||| |||||  ||||||||| |||||| |||| ||||    
T  1162165 ttataagctcgtttgaataaaaaggacccgtttaataaacgtcactttctcacgaacttatagcttattcttactatcttatagcg 1162250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 39033490 - 39033558
Alignment:
Q  112 agcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 180  Q
    |||||||| || |||| | |||||||| ||||| || |||||||| |||||||||| ||||||||||||    
T  39033490 agcttatatcttatgtctgataagctcttttgactagaaaagacccgtttggtaactgtcactttctca 39033558  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 50130922 - 50130973
Alignment:
Q  115 ttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaa 166  Q
    |||||||| |||| |||||||||||||||| ||||||||| | |||||||||    
T  50130922 ttatagcttatgtcttataagctcatttgactaaaaaagaaccgtttggtaa 50130973  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 24474050 - 24474084
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttgg 163  Q
    |||||||||||| ||||||||||||||||||||||    
T  24474050 ttataagctcatatgattaaaaaagacctgtttgg 24474084  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 30070077 - 30070117
Alignment:
Q  112 agcttatagctaatgtgttataagctcatttgattaaaaaa 152  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  30070077 agcttatagctcatgtcttataagctcatttgactaaaaaa 30070117  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 41963530 - 41963462
Alignment:
Q  112 agcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 180  Q
    ||||||||| | |||| |||||| ||||||||| || ||||||||| |||| ||||  |||||||||||    
T  41963530 agcttatagtttatgtcttataatctcatttgactagaaaagacctatttgataacaatcactttctca 41963462  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 9195403 - 9195531
Alignment:
Q  81 tatagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagct-catttgattaaaaaa-gacctgtttggtaaccgtcactttct 178  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||  ||||| ||||| | ||||||||||||||| |||| ||||| |||| ||| ||||||    
T  9195403 tatatggtctgtttggtaagacatgttttagagcttatagct--tgtgtcataagtttcatttgattaaaaaaagacccgtttgataactgtctctttct 9195500  T
Q  179 caggaactattagcttatttttactagctta 209  Q
    || || ||  ||||||| |||||||||||||    
T  9195501 cacgatcttatagcttaattttactagctta 9195531  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 29052146 - 29052214
Alignment:
Q  83 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaa 151  Q
    |||||| |||||  ||||||||| |||||||||||||||| |||| |||||| ||| ||||| ||||||    
T  29052146 tagggtctgtttgataagacatgcttttgagcttatagcttatgtcttataaactcctttgactaaaaa 29052214  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 2255202 - 2255263
Alignment:
Q  147 aaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctt 208  Q
    ||||||||||||||||||||| |||| |||||||   |||  ||||||||| ||||||||||    
T  2255202 aaaaaagacctgtttggtaactgtcattttctcacacacttatagcttattattactagctt 2255263  T

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Target: scaffold0040 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 50039 - 49941
Alignment:
Q  118 tagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcggt 216  Q
    ||||| |||| |||| | ||||||||| ||||||||||| |||||||||| |||||||||||| || ||  |||||||||||||  |||||| ||||||    
T  50039 tagcttatgtcttattaactcatttgactaaaaaagacccgtttggtaacggtcactttctcacgagcttatagcttatttttaagagcttatagcggt 49941  T

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Target: scaffold0536 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 4295 - 4360
Alignment:
Q  87 gtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaa 152  Q
    |||||||| |||||||||| ||||||||| |||| | || |  ||||||||||||||| |||||||    
T  4295 gtttgtttggtaagacatgattttgagctcatagtttatatcatataagctcatttgactaaaaaa 4360  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 166540 - 166625
Alignment:
Q  129 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 214  Q
    ||||| |||||||| | || |||||||||||||| |||||| |||||  ||| || ||  || |||||||||||||||||| ||||    
T  166540 ttatatgctcatttcactagaaaagacctgtttgataaccgccacttcgtcacgagcttataacttatttttactagcttatagcg 166625  T

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