View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0259_low_3 (Length: 449)

Name: NF0259_low_3
Description: NF0259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0259_low_3
NF0259_low_3
[»] chr5 (17 HSPs)
chr5 (30-319)||(13838113-13838402)
chr5 (329-414)||(25983369-25983454)
chr5 (337-383)||(4204207-4204253)
chr5 (338-383)||(18538332-18538377)
chr5 (340-383)||(20192384-20192427)
chr5 (340-383)||(27532616-27532659)
chr5 (340-383)||(30192523-30192566)
chr5 (340-383)||(38968126-38968169)
chr5 (329-383)||(17965880-17965934)
chr5 (329-383)||(17966874-17966928)
chr5 (361-414)||(13665383-13665436)
chr5 (361-414)||(13707390-13707443)
chr5 (361-414)||(39742542-39742595)
chr5 (371-411)||(13581738-13581778)
chr5 (361-405)||(29430631-29430675)
chr5 (361-405)||(42098279-42098323)
chr5 (341-381)||(42912878-42912918)
[»] chr3 (24 HSPs)
chr3 (30-319)||(1293766-1294055)
chr3 (329-386)||(52515009-52515066)
chr3 (329-382)||(55176336-55176389)
chr3 (340-383)||(19341075-19341118)
chr3 (340-383)||(32593111-32593154)
chr3 (337-383)||(2062417-2062463)
chr3 (329-383)||(19341582-19341636)
chr3 (335-380)||(47443529-47443574)
chr3 (329-381)||(40877761-40877813)
chr3 (340-383)||(34691656-34691699)
chr3 (340-383)||(36817520-36817563)
chr3 (340-383)||(43478829-43478872)
chr3 (340-383)||(48246443-48246486)
chr3 (340-379)||(48566377-48566416)
chr3 (341-383)||(13896876-13896918)
chr3 (337-383)||(14043894-14043940)
chr3 (337-383)||(29918337-29918383)
chr3 (337-383)||(29929457-29929503)
chr3 (337-383)||(29967490-29967536)
chr3 (337-383)||(29978611-29978657)
chr3 (340-381)||(600543-600584)
chr3 (329-382)||(33471502-33471555)
chr3 (346-383)||(42148323-42148360)
chr3 (339-383)||(30256001-30256045)
[»] chr2 (18 HSPs)
chr2 (30-319)||(43313072-43313361)
chr2 (30-316)||(26543670-26543964)
chr2 (329-384)||(38779605-38779660)
chr2 (337-383)||(2271733-2271779)
chr2 (329-383)||(43258721-43258775)
chr2 (362-414)||(958662-958714)
chr2 (357-413)||(42176049-42176104)
chr2 (340-383)||(7189950-7189993)
chr2 (340-383)||(24601670-24601713)
chr2 (340-383)||(24612401-24612444)
chr2 (340-383)||(29407886-29407929)
chr2 (340-383)||(40156430-40156473)
chr2 (340-383)||(41183223-41183266)
chr2 (337-383)||(435373-435419)
chr2 (337-383)||(41008924-41008970)
chr2 (329-383)||(42177202-42177256)
chr2 (341-383)||(45137433-45137475)
chr2 (338-383)||(12908426-12908471)
[»] chr7 (17 HSPs)
chr7 (30-319)||(7975008-7975297)
chr7 (329-405)||(42024303-42024379)
chr7 (361-414)||(27919000-27919053)
chr7 (329-382)||(40142649-40142702)
chr7 (335-387)||(42795107-42795159)
chr7 (340-383)||(20353929-20353972)
chr7 (363-414)||(40142716-40142767)
chr7 (329-375)||(7953722-7953768)
chr7 (341-383)||(17838681-17838723)
chr7 (329-383)||(40141445-40141499)
chr7 (340-381)||(17834520-17834561)
chr7 (340-381)||(30791007-30791048)
chr7 (329-382)||(42025073-42025126)
chr7 (361-414)||(45350874-45350927)
chr7 (341-381)||(19804463-19804503)
chr7 (329-381)||(38266066-38266118)
chr7 (361-405)||(45351730-45351774)
[»] chr1 (26 HSPs)
chr1 (70-287)||(9901027-9901245)
chr1 (329-383)||(46216429-46216483)
chr1 (329-383)||(3941138-3941192)
chr1 (329-383)||(46217306-46217360)
chr1 (329-382)||(29425324-29425377)
chr1 (329-379)||(45943714-45943764)
chr1 (329-383)||(46043537-46043591)
chr1 (335-383)||(29424411-29424459)
chr1 (329-380)||(26606832-26606883)
chr1 (336-383)||(28456481-28456528)
chr1 (336-383)||(44336280-44336327)
chr1 (363-414)||(46043473-46043524)
chr1 (336-383)||(49875334-49875381)
chr1 (329-383)||(3939985-3940039)
chr1 (329-383)||(7820158-7820212)
chr1 (341-383)||(13761044-13761086)
chr1 (329-383)||(48751398-48751452)
chr1 (361-414)||(1167529-1167582)
chr1 (340-381)||(18609894-18609935)
chr1 (340-381)||(20353934-20353975)
chr1 (336-381)||(22524159-22524204)
chr1 (334-383)||(36072400-36072449)
chr1 (346-383)||(40056785-40056822)
chr1 (331-383)||(49502811-49502864)
chr1 (337-377)||(15695831-15695871)
chr1 (340-368)||(45977671-45977699)
[»] chr4 (19 HSPs)
chr4 (72-156)||(8264044-8264129)
chr4 (72-156)||(8277462-8277547)
chr4 (329-383)||(17342173-17342227)
chr4 (363-414)||(17343457-17343508)
chr4 (329-383)||(9473649-9473703)
chr4 (341-383)||(45971759-45971801)
chr4 (329-382)||(17343390-17343443)
chr4 (334-383)||(34503740-34503789)
chr4 (363-414)||(9473716-9473767)
chr4 (340-383)||(11565897-11565940)
chr4 (340-383)||(16984160-16984203)
chr4 (340-383)||(36480539-36480582)
chr4 (336-383)||(37022056-37022103)
chr4 (329-383)||(9472889-9472943)
chr4 (340-405)||(67601-67666)
chr4 (343-388)||(37015924-37015969)
chr4 (334-383)||(38368259-38368308)
chr4 (329-365)||(32537594-32537630)
chr4 (339-383)||(48256566-48256610)
[»] chr6 (17 HSPs)
chr6 (72-156)||(33032851-33032936)
chr6 (72-156)||(33051093-33051178)
chr6 (329-383)||(9048106-9048160)
chr6 (329-383)||(32223501-32223555)
chr6 (340-383)||(9049083-9049126)
chr6 (340-379)||(11157771-11157810)
chr6 (361-414)||(17596908-17596961)
chr6 (340-383)||(8193208-8193251)
chr6 (340-383)||(11840249-11840292)
chr6 (340-383)||(13388707-13388750)
chr6 (340-383)||(31146404-31146447)
chr6 (341-383)||(19757303-19757345)
chr6 (329-383)||(32222560-32222614)
chr6 (363-405)||(35241889-35241931)
chr6 (336-381)||(3380803-3380848)
chr6 (343-383)||(32643523-32643563)
chr6 (329-369)||(35241953-35241993)
[»] chr8 (18 HSPs)
chr8 (329-383)||(21406298-21406352)
chr8 (329-383)||(21800790-21800844)
chr8 (363-414)||(21406234-21406285)
chr8 (363-414)||(21800726-21800777)
chr8 (363-414)||(38135664-38135715)
chr8 (329-383)||(21835167-21835221)
chr8 (341-383)||(40039684-40039726)
chr8 (329-383)||(44727493-44727547)
chr8 (329-374)||(38134405-38134450)
chr8 (338-382)||(22577697-22577741)
chr8 (341-381)||(24249518-24249558)
chr8 (363-414)||(21835234-21835285)
chr8 (329-380)||(23512726-23512777)
chr8 (340-383)||(43262452-43262495)
chr8 (341-383)||(32383205-32383247)
chr8 (341-383)||(32437160-32437202)
chr8 (342-383)||(45133274-45133315)
chr8 (117-153)||(30803279-30803315)
[»] scaffold0794 (1 HSPs)
scaffold0794 (340-383)||(5302-5345)
[»] scaffold0065 (1 HSPs)
scaffold0065 (340-383)||(65349-65392)
[»] scaffold0016 (1 HSPs)
scaffold0016 (336-383)||(68409-68456)
[»] scaffold1500 (1 HSPs)
scaffold1500 (329-383)||(747-801)
[»] scaffold0012 (1 HSPs)
scaffold0012 (329-383)||(232820-232874)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 13838113 - 13838402
Alignment:
Q  30 tggcgttgattcaaaagaactatgataattgaagaaataaaaggctcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgca 129  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  13838113 tggcgttgagtcaaaagaactatgataattgaaggaataaaaggctctgaaaaataatgggtataagaaagttatcagcacaggaaatcaaagtggtgca 13838212  T
Q  130 tgactatctctatgattcatcatagcctatgaaatcaatagctttatacaatgttataattgagaaggaataattaagattgcaaaaaggaaaagtatag 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  13838213 tgactatctctatgattcatcatagcctatgaaattaatagctttatactatgttataattgagaaggaataattaagattgcaaaaagaaaaagcatag 13838312  T
Q  230 agaagaaactagagatagggatatttgtgaagaagacaatgaagaaagaagggtgtggtgtttacaactcctcggtacttaagtgccgat 319  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13838313 agaagaaactagagattgagatatttgtgaagaagacaatgaagaaagaagggtgtggcgtttacaactcctcggtacttaagtgccgat 13838402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 25983454 - 25983369
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||||| ||||| ||||||||| ||| |||||||||| |||||||||||||||||| |||| || |||||||| ||||||||    
T  25983454 tttgaagtttcctcggtagttaactaccgatgttttcctcggtagttaactgcagagggggtattgtggtattttactagtgtttc 25983369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 4204207 - 4204253
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  4204207 tttctcggcagttaactaccgaggttttcctcgacagttaactgcag 4204253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 18538332 - 18538377
Alignment:
Q  338 ttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||    
T  18538332 ttctcggcagttaactaccgaagttttcctcggcagttaactgcag 18538377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 20192427 - 20192384
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||    
T  20192427 ctcggcatttaactatcgaagttttcctcggcagttaactgcag 20192384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 27532616 - 27532659
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||    
T  27532616 ctcggcagttaactgccgaggttttcctcgatagttaactgcag 27532659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 30192566 - 30192523
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||    
T  30192566 ctcggcagttaactgccgaagttttcctcgacagttaactgcag 30192523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 38968169 - 38968126
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||    
T  38968169 ctcggcagttaactatcgaggttttcctcggcagttaactgcag 38968126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 17965934 - 17965880
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||| ||||||| ||| ||||||||||  ||||||||||||    
T  17965934 tttgaagtttcctcggcaattaactaccgatgttttcctcggcagttaactgcag 17965880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 17966874 - 17966928
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||| ||||||||||| |||  ||||||||| |||||||||||||    
T  17966874 tttgaagtttcctcagcagttaactaccgagattttcctcggtagttaactgcag 17966928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 13665436 - 13665383
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||||  |||||||| |||||||| ||||||||||||||||  |||||||    
T  13665436 ttttcctcggcagttaactacagagggggtattttgatattttactggtgtttc 13665383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 13707443 - 13707390
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||  |||||||    
T  13707443 ttttcctcggcagttaactgcagagggggtattttggtattttactggtgtttc 13707390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 39742595 - 39742542
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||  |||||||    
T  39742595 ttttcctcggcagttaactgcagagggggtattttggtattttactggtgtttc 39742542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 13581738 - 13581778
Alignment:
Q  371 tagttaactgcagaggggatattttgatattttacgagtgt 411  Q
    ||||||||||| || |||||||||||||||||||| |||||    
T  13581738 tagttaactgccgaagggatattttgatattttactagtgt 13581778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 29430631 - 29430675
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttac 405  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||    
T  29430631 ttttcctcggcagttaactgcagagggggtattttggtattttac 29430675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 42098323 - 42098279
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttac 405  Q
    |||||||||  |||||||||||||| |||||||||| ||||||||    
T  42098323 ttttcctcggcagttaactgcagagaggatattttggtattttac 42098279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 42912878 - 42912918
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    |||||||||||||  |||||||||||||| |||||||||||    
T  42912878 tcggcagttaactgccgaagttttcctcggtagttaactgc 42912918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 1293766 - 1294055
Alignment:
Q  30 tggcgttgattcaaaagaactatgataattgaagaaataaaaggctcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgca 129  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  1293766 tggcgttgagtcaaaagaactatgataattgaaggaataaaagactctgaaaaataatgggtataagaaagttatcagcacaggaaatcaaagtggtgca 1293865  T
Q  130 tgactatctctatgattcatcatagcctatgaaatcaatagctttatacaatgttataattgagaaggaataattaagattgcaaaaaggaaaagtatag 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  1293866 tgactatctctatgattcatcatagcctatgaaattaatagctttatactatgttataattgagaaggaataattaagattgcaaaaagaaaaagcatag 1293965  T
Q  230 agaagaaactagagatagggatatttgtgaagaagacaatgaagaaagaagggtgtggtgtttacaactcctcggtacttaagtgccgat 319  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1293966 agaagaaactagagattgagatatttgtgaagaagacaatgaagaaagaagggtgtggcgtttacaactcctcggtacttaagtgccgat 1294055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 52515009 - 52515066
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcagagg 386  Q
    ||||| |||| ||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  52515009 tttgaggtttcctcggcagtgaactgtcgaagttttcctcgatagttaactgccgagg 52515066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 55176336 - 55176389
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgca 382  Q
    ||||| |||| ||||||||||||||  |||||||||||||||||||||||||||    
T  55176336 tttgaggtttcctcggcagttaactgccgaagttttcctcgatagttaactgca 55176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 19341118 - 19341075
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||| ||||||||||||||| |||||||||||||    
T  19341118 ctcggcagttaactgtcgaagttttcctcggtagttaactgcag 19341075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 32593111 - 32593154
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  32593111 ctcggcagttaactatcgaagttttcctcggaagttaactgcag 32593154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 2062463 - 2062417
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||    
T  2062463 tttctcggcagttaactgccgaagttttcctcgacagttaactgcag 2062417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 19341582 - 19341636
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||| |||| ||||||||||||||  |||||||||||||| |||||||||||||    
T  19341582 tttgaggtttcctcggcagttaactgccgaagttttcctcggtagttaactgcag 19341636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 47443574 - 47443529
Alignment:
Q  335 gttttctcggcagttaactatcgaagttttcctcgatagttaactg 380  Q
    |||||||||||||||||||  ||||||||||||||| |||||||||    
T  47443574 gttttctcggcagttaactgccgaagttttcctcgaaagttaactg 47443529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 40877761 - 40877813
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    |||||||||| ||||||||||||||  |||||||||||||| ||||| |||||    
T  40877761 tttgaagtttcctcggcagttaactgccgaagttttcctcggtagtttactgc 40877813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 34691699 - 34691656
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  34691699 ctcggcagttaactaccgaggttttcctcgacagttaactgcag 34691656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 36817520 - 36817563
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||    
T  36817520 ctcggcagttaactaccgaggatttcctcgatagttaactgcag 36817563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 43478829 - 43478872
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||    
T  43478829 ctcggcagttaactaccgaagttttcctcggcagttaactgcag 43478872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 48246486 - 48246443
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  48246486 ctcggcagttaactaccgaggttttcctcgacagttaactgcag 48246443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 48566416 - 48566377
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaact 379  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  48566416 ctcggcagttaactaccgaagttttcctcggtagttaact 48566377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 13896876 - 13896918
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||    
T  13896876 tcggcagttaactaccgaggttttcctcgacagttaactgcag 13896918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 14043894 - 14043940
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||  ||||||||||||||  ||||||||||||    
T  14043894 tttctcggcagttaactgccgaagttttcctcggcagttaactgcag 14043940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 29918337 - 29918383
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||||    
T  29918337 tttctcggcagttaactaacgaggttttcctcggcagttaactgcag 29918383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 29929503 - 29929457
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||||||| ||||||||||  |||||| |||||    
T  29929503 tttctcggcagttaactatcgaggttttcctcggcagttaattgcag 29929457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 29967490 - 29967536
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||||    
T  29967490 tttctcggcagttaactaacgaggttttcctcggcagttaactgcag 29967536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 29978657 - 29978611
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||||||| ||||||||||  |||||| |||||    
T  29978657 tttctcggcagttaactatcgaggttttcctcggcagttaattgcag 29978611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 600543 - 600584
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||    
T  600543 ctcggcagttaactaccgaggttttcctcgacagttaactgc 600584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 33471555 - 33471502
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgca 382  Q
    |||||||||| |||| ||||||| || |||| |||||||||||||| |||||||    
T  33471555 tttgaagtttcctcgacagttaattaccgaaattttcctcgatagtcaactgca 33471502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 383
Target Start/End: Complemental strand, 42148360 - 42148323
Alignment:
Q  346 agttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  42148360 agtttactttcgaagttttcctcgatagttaactgcag 42148323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 30256001 - 30256045
Alignment:
Q  339 tctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||| ||||||||||||||| ||||||||||  ||||||||||||    
T  30256001 tctcagcagttaactatcgaggttttcctcggcagttaactgcag 30256045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 43313072 - 43313361
Alignment:
Q  30 tggcgttgattcaaaagaactatgataattgaagaaataaaaggctcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgca 129  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||| ||||| | |||||||||    
T  43313072 tggcgttgagtcaaaagaactatgataattgaaggaataaaagactctgaaaaataatgggtataagaaagttatcagcacaggaaattaaagtggtgca 43313171  T
Q  130 tgactatctctatgattcatcatagcctatgaaatcaatagctttatacaatgttataattgagaaggaataattaagattgcaaaaaggaaaagtatag 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  43313172 tgactatctctatgattcatcatagcctatgaaattaatagctttatactatgttataattgagaatgaataattaagattgcaaaaagaaaaagcatag 43313271  T
Q  230 agaagaaactagagatagggatatttgtgaagaagacaatgaagaaagaagggtgtggtgtttacaactcctcggtacttaagtgccgat 319  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43313272 agaagaaactagagattgagatatttgtgaagaagacaatgaagaaagaagggtgtggcgtttacaactcctcggtacttaagtgccgat 43313361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 26543670 - 26543964
Alignment:
Q  30 tggcgttgattcaaaagaactatgataattgaagaaataaaaggctcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgca 129  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  26543670 tggcgttgagtcaaaagaactatgataattgaaggaataaaaggctctgaaaaataatgggtataagaaagttatcagcacaggaaatcaaagtggtgca 26543769  T
Q  130 tgactatctctatgattcatcatagcctatgaaatcaatagctttatac--------aatgttataattgagaaggaataattaagattgcaaaaaggaa 221  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||         |||||||||||||||| |||||||||||||||||||||| ||    
T  26543770 tgactatctctatgattcatcatagcctatgaaattaatagctttatactatgttattatgttataattgagaatgaataattaagattgcaaaaagaaa 26543869  T
Q  222 aagtatagagaagaaactagagatagggatatttgtgaagaagacaatgaagaaagaagggtgtggtgtttacaactcctcggtacttaagtgcc 316  Q
    ||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26543870 aagcatagagaagaaactagagattgagatatttgtgaagaagacaatgaagaaagaagggtgtggcgtttacaactcctcggtacttaagtgcc 26543964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 38779605 - 38779660
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcaga 384  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||    
T  38779605 tttgaagtttcctcggcagttaactgtcgaagttttcctcggtagtttactgcaga 38779660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 2271733 - 2271779
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||    
T  2271733 tttctcggcagttaactgccgaagttttcctcgacagttaactgcag 2271779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 43258721 - 43258775
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| | |||||||| ||| |||||||||||||    
T  43258721 tttgaagtttcctcggcagttaactaccaaagttttcttcggtagttaactgcag 43258775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 958662 - 958714
Alignment:
Q  362 tttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||  |||||||    
T  958662 tttcctcggtagttaactgcagagggggtattttggtattttactggtgtttc 958714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 42176104 - 42176049
Alignment:
Q  357 gaagttttcctcgatagttaactgcagaggggatattttgatattttacgagtgttt 413  Q
    ||||||||| |||| ||||||||||||||||| ||||||| |||||||| |||||||    
T  42176104 gaagttttc-tcgacagttaactgcagagggggtattttggtattttactagtgttt 42176049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 7189950 - 7189993
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||    
T  7189950 ctcggcagttaactaccgaagttttcctcggcagttaactgcag 7189993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 24601713 - 24601670
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||    
T  24601713 ctcggcagttaactaccgaagatttcctcggtagttaactgcag 24601670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 24612401 - 24612444
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||    
T  24612401 ctcggcagttaactaccgaagatttcctcggtagttaactgcag 24612444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 29407886 - 29407929
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||  |||||||||||||| |||||||||||||    
T  29407886 ctcggcagttaactgccgaagttttcctcgttagttaactgcag 29407929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 40156473 - 40156430
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  40156473 ctcggcagttaactgtcgaagttttcctcgtcagttaactgcag 40156430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 41183223 - 41183266
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||    
T  41183223 ctcggcagttaactaccgaggttttcctcggtagttaactgcag 41183266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 435419 - 435373
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||| ||||||||| |||||||||| ||||| |||||||    
T  435419 tttctcggcagtcaactatcgaggttttcctcggtagtttactgcag 435373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 41008924 - 41008970
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||| ||||||||||||||  |||||| |||||    
T  41008924 tttctcggcagttaactaccgaagttttcctcggcagttaaatgcag 41008970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 42177202 - 42177256
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||| |||| ||||||||||||||| |||||||||||| | |||||||| ||||    
T  42177202 tttgacgtttcctcggcagttaactaccgaagttttcctaggtagttaacagcag 42177256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 45137433 - 45137475
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||||||||||| |||  ||||||||||||    
T  45137433 tcggcagttaactatcgaagttttcatcggcagttaactgcag 45137475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 12908426 - 12908471
Alignment:
Q  338 ttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||    
T  12908426 ttctcggcagttaactatcaaggttttcctcggcagttaactgcag 12908471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 7975297 - 7975008
Alignment:
Q  30 tggcgttgattcaaaagaactatgataattgaagaaataaaaggctcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgca 129  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  7975297 tggcgttgagtcaaaagaactatcataattgaaggaataaaaggctctgaaaaataatgggtataagaaagttatcagcacaggaaatcaaagtggtgca 7975198  T
Q  130 tgactatctctatgattcatcatagcctatgaaatcaatagctttatacaatgttataattgagaaggaataattaagattgcaaaaaggaaaagtatag 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||| ||||    
T  7975197 tgactatctctatgattcatcatagcctatgaaattaatagctttatactatgttataattaagaaggaataattaagatcgcaaaaagaaaaagcatag 7975098  T
Q  230 agaagaaactagagatagggatatttgtgaagaagacaatgaagaaagaagggtgtggtgtttacaactcctcggtacttaagtgccgat 319  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  7975097 agaagaaactagagagtgagatatttgtgaagaagacaatgaagaaagaagggtgtggcgtttacaactcctcggtacttaagtgtcgat 7975008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 405
Target Start/End: Complemental strand, 42024379 - 42024303
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcagaggggatattttgatattttac 405  Q
    |||||||||| ||| ||| ||||||| |||| ||||||||||||||||||| ||||  ||||||||| |||||||||    
T  42024379 tttgaagtttcctcagcaattaactaccgaaattttcctcgatagttaactacagataggatattttaatattttac 42024303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 27919053 - 27919000
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||  |||||||    
T  27919053 ttttcctcgacagttaactacagagggggtattttgatattttactggtgtttc 27919000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 40142649 - 40142702
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgca 382  Q
    ||||||||||||||||||||||| ||  ||||||||| ||| ||||||||||||    
T  40142649 tttgaagttttctcggcagttaattacagaagttttcttcggtagttaactgca 40142702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 42795107 - 42795159
Alignment:
Q  335 gttttctcggcagttaactatcgaagttttcctcgatagttaactgcagaggg 387  Q
    |||||||||||||||||||  ||||||||||||||  |||||||||| |||||    
T  42795107 gttttctcggcagttaactgccgaagttttcctcggcagttaactgccgaggg 42795159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 20353929 - 20353972
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||  || ||||||||||||||||||||||||    
T  20353929 ctcggcagttaactactgaggttttcctcgatagttaactgcag 20353972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 40142716 - 40142767
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||| | ||||||||||||||| ||||||| |||||||| ||||||||    
T  40142716 ttcctcgacaattaactgcagagggggtattttggtattttactagtgtttc 40142767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 7953722 - 7953768
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagtt 375  Q
    |||||||||| ||||||||||||||  |||||||||||||| |||||    
T  7953722 tttgaagtttcctcggcagttaactgccgaagttttcctcggtagtt 7953768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 17838723 - 17838681
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||| |||||||||| ||||| |||||||    
T  17838723 tcggcagttaactatcgaggttttcctcggtagtttactgcag 17838681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 40141499 - 40141445
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||| ||||||| | ||||||| |||| |||||||||||||    
T  40141499 tttgaagtttcctcggcaattaactaccaaagtttttctcggtagttaactgcag 40141445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 17834561 - 17834520
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||||||||| ||||||||||||||  ||||||||||    
T  17834561 ctcggcagttaactaccgaagttttcctcggcagttaactgc 17834520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 30791007 - 30791048
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||||||||| ||| |||||||||| |||||||||||    
T  30791007 ctcggcagttaactaccgaggttttcctcggtagttaactgc 30791048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 42025073 - 42025126
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgca 382  Q
    |||||||||| |||| |||||||||| ||||||||| |||  ||||||||||||    
T  42025073 tttgaagtttcctcgacagttaactaccgaagtttttctctgtagttaactgca 42025126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 45350927 - 45350874
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||  |||||||    
T  45350927 ttttcctcggcagttaactgcagagggggtattttggtattttactggtgtttc 45350874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 19804463 - 19804503
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||||||| ||||||  |||||||||||||||||||    
T  19804463 tcggcagttaactgtcgaagaattcctcgatagttaactgc 19804503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 38266066 - 38266118
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    |||||||||| | |||||||||| | |||| |||||||||||||||| |||||    
T  38266066 tttgaagtttccgcggcagttaaatgtcgaggttttcctcgatagtttactgc 38266118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 45351730 - 45351774
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttac 405  Q
    |||||||||| ||||||||||||||||| ||||||  ||||||||    
T  45351730 ttttcctcgacagttaactgcagagggggtattttagtattttac 45351774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 70 - 287
Target Start/End: Original strand, 9901027 - 9901245
Alignment:
Q  70 aaggctcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgcatgactatctctatgattcatcatagcctatgaaatcaata 169  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||||||||| ||  ||| || |    
T  9901027 aaggctcagaaaaataatgggtatgagaaaattatcagcacaggaaatcagagtggtgcatgactatctctaaaattcatcatagccaatataattaaaa 9901126  T
Q  170 gctttatacaatgttataattgagaaggaa-taattaagattgcaaa-aaggaaaagtatagagaagaaact-agagatagggatatttgtgaagaagac 266  Q
    ||   |||  ||||||||||||||||  || |||  ||||||  ||| || ||||| ||||||||| |||||  ||||||| || |||||||| |||||     
T  9901127 gc-gcataacatgttataattgagaaaaaagtaaaaaagattataaagaatgaaaa-tatagagaaaaaactgtgagatagagagatttgtgatgaagaa 9901224  T
Q  267 aatgaagaaagaagggtgtgg 287  Q
    ||||||| |||||||||||||    
T  9901225 aatgaaggaagaagggtgtgg 9901245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 46216483 - 46216429
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  46216483 tttgaagtttcctcggcagttaactaccgaagttttcctcgatagttaactgcag 46216429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 3941138 - 3941192
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  3941138 tttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaactgcag 3941192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 46217306 - 46217360
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  46217306 tttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaactgcag 46217360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 29425324 - 29425377
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgca 382  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  29425324 tttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaactgca 29425377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 45943714 - 45943764
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaact 379  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  45943714 tttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaact 45943764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 46043591 - 46043537
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||    
T  46043591 tttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaattgcag 46043537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 29424459 - 29424411
Alignment:
Q  335 gttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  29424459 gtttcctcggcagttaactaccgaagttttcctcggtagttaactgcag 29424411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 26606883 - 26606832
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactg 380  Q
    ||||| |||| ||||||||||||||  |||||||||||||| ||||||||||    
T  26606883 tttgaggtttcctcggcagttaactgccgaagttttcctcggtagttaactg 26606832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 28456528 - 28456481
Alignment:
Q  336 ttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||||    
T  28456528 ttttctcggtagtttactgccgaagttttcctcgatagttaactgcag 28456481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 44336327 - 44336280
Alignment:
Q  336 ttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||||| ||| ||||||||||  ||||||||||||    
T  44336327 ttttctcggcagttaactaccgaggttttcctcggcagttaactgcag 44336280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 46043524 - 46043473
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||  |||||||    
T  46043524 ttcctcggtagttaactgcagaggagatattttggtattttactcgtgtttc 46043473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 49875334 - 49875381
Alignment:
Q  336 ttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||||    
T  49875334 ttttctcggtagtttactgccgaagttttcctcgatagttaactgcag 49875381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 3940039 - 3939985
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| |||||||||  ||| || ||||||||||    
T  3940039 tttgaagtttcctcggcagttaactaccgaagtttttatcggtaattaactgcag 3939985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 7820212 - 7820158
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||| |||| ||||||||||||||  |||||||||  |||||||||||||||||    
T  7820212 tttgaggtttcctcggcagttaactgccgaagtttttttcgatagttaactgcag 7820158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 13761044 - 13761086
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||| |||||||||||||||  ||||||||||||    
T  13761044 tcggcagttaactgtcgaagttttcctcggcagttaactgcag 13761086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 48751398 - 48751452
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| ||| ||||||||||  | ||||||||||    
T  48751398 tttgaagtttcctcggcagttaactaccgaggttttcctcggcaattaactgcag 48751452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 1167582 - 1167529
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||  |||||||    
T  1167582 ttttcctcggcagttaactgcagagggggtattttggtattttacttgtgtttc 1167529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 18609894 - 18609935
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  18609894 ctcggcagttaactgccgaagttttcctcggtagttaactgc 18609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 20353934 - 20353975
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||||||||| ||||||||||||||  ||||||||||    
T  20353934 ctcggcagttaactaccgaagttttcctcggcagttaactgc 20353975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 22524204 - 22524159
Alignment:
Q  336 ttttctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  22524204 ttttctcggcagttaactaccgaggttttcctcgggagttaactgc 22524159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 36072449 - 36072400
Alignment:
Q  334 agttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||| |||||||||||||| ||| ||||||||||  ||||||||||||    
T  36072449 agttttttcggcagttaactaccgaggttttcctcggcagttaactgcag 36072400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 383
Target Start/End: Complemental strand, 40056822 - 40056785
Alignment:
Q  346 agttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  40056822 agttaactatcgaaattttcctcgacagttaactgcag 40056785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 49502811 - 49502864
Alignment:
Q  331 tgaagttttc-tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| |||| ||||||||  |||||||||||||| |||||||||||||    
T  49502811 tgaagttttcctcggtagttaactgccgaagttttcctcggtagttaactgcag 49502864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 15695871 - 15695831
Alignment:
Q  337 tttctcggcagttaactatcgaagttttcctcgatagttaa 377  Q
    |||||||||||||||||  ||||||||||||||| ||||||    
T  15695871 tttctcggcagttaactgccgaagttttcctcgacagttaa 15695831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 368
Target Start/End: Original strand, 45977671 - 45977699
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctc 368  Q
    |||||||||||||||||||||||||||||    
T  45977671 ctcggcagttaactatcgaagttttcctc 45977699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 8264129 - 8264044
Alignment:
Q  72 ggctcagaaaaataatgggtatgagaaagttatcagcacatgaa-atcagagtggtgcatgactatctctatgattcatcatagcc 156  Q
    |||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  8264129 ggctcagaaaaataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctctatgattcatcatagcc 8264044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 8277547 - 8277462
Alignment:
Q  72 ggctcagaaaaataatgggtatgagaaagttatcagcacatgaa-atcagagtggtgcatgactatctctatgattcatcatagcc 156  Q
    |||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  8277547 ggctcagaaaaataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctctatgattcatcatagcc 8277462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 17342227 - 17342173
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  17342227 tttgaagttttctcggcagttaactaccgaagtttttctcggtagttaactgcag 17342173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 17343457 - 17343508
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  17343457 ttcctcgacagttaactgcagatgggatattttgatattttactagtgtttc 17343508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 9473649 - 9473703
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| || |||||||||||| |||| ||||||||| |||||||||||||    
T  9473649 tttgaagtttccttggcagttaactaccgaaattttcctcggtagttaactgcag 9473703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 45971759 - 45971801
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  45971759 tcggcagttaactaccgaagttttcttcgatagttaactgcag 45971801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 17343390 - 17343443
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgca 382  Q
    ||||||||||||||||||||||||||  ||||||||| ||| || |||||||||    
T  17343390 tttgaagttttctcggcagttaactacagaagttttcttcggtaattaactgca 17343443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 34503789 - 34503740
Alignment:
Q  334 agttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||| ||||||||||||||| ||||||||| |||| |||||||||||||    
T  34503789 agtttcctcggcagttaactaccgaagtttttctcggtagttaactgcag 34503740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 9473716 - 9473767
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||| | ||||||||||||| | |||||||||||||||| ||||||||    
T  9473716 ttcctcgacaattaactgcagaggtggtattttgatattttaccagtgtttc 9473767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 11565940 - 11565897
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||    
T  11565940 ctcgacagttaactgtcgaagttttcctcgacagttaactgcag 11565897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 16984160 - 16984203
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||    
T  16984160 ctcggcagttaactatcgaggttttcctcggcagttaactgcag 16984203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 36480539 - 36480582
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||    
T  36480539 ctcggtagttaactaccgaagttttcctcggtagttaactgcag 36480582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 37022056 - 37022103
Alignment:
Q  336 ttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||||  ||| |||||||||| |||||||||||||    
T  37022056 ttttctcggcagttaactgccgaggttttcctcggtagttaactgcag 37022103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 9472943 - 9472889
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| |||| ||||||| || ||||| |||||||| |||||||||||||    
T  9472943 tttgaagtttcctcgacagttaattaccgaagatttcctcggtagttaactgcag 9472889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 67666 - 67601
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcagaggggatattttgatattttac 405  Q
    ||||||||||||||| ||| ||||||||||| |||||||||  ||||||  |||||  ||||||||    
T  67666 ctcggcagttaactaccgaggttttcctcgacagttaactgtcgagggggcattttcgtattttac 67601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 37015969 - 37015924
Alignment:
Q  343 ggcagttaactatcgaagttttcctcgatagttaactgcagagggg 388  Q
    |||||||||||| ||||||||||||||  |||||||||| ||||||    
T  37015969 ggcagttaactaccgaagttttcctcggcagttaactgccgagggg 37015924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 38368308 - 38368259
Alignment:
Q  334 agttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||| |||| |||| ||||||||||||||  ||||||||||||    
T  38368308 agttttctcggtagtttactaccgaagttttcctcggcagttaactgcag 38368259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 32537630 - 32537594
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttc 365  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  32537630 tttgaggtttcctcggcagttaactatcgaagttttc 32537594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 48256566 - 48256610
Alignment:
Q  339 tctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||||  |||||||||||||  ||||||||||||    
T  48256566 tctcggcagttaactactgaagttttcctcggcagttaactgcag 48256610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 33032936 - 33032851
Alignment:
Q  72 ggctcagaaaaataatgggtatgagaaagttatcagcacatgaa-atcagagtggtgcatgactatctctatgattcatcatagcc 156  Q
    |||||||||||||||||||||||||||| ||||||||||   || ||||||||||||||||||||||||||||| |||||||||||    
T  33032936 ggctcagaaaaataatgggtatgagaaaattatcagcacggaaacatcagagtggtgcatgactatctctatgactcatcatagcc 33032851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 33051178 - 33051093
Alignment:
Q  72 ggctcagaaaaataatgggtatgagaaagttatcagcacatgaaa--tcagagtggtgcatgactatctctatgattcatcatagcc 156  Q
    |||||||||||||| ||||||||||||| |||||||||  |||||  | |||||||||||||||||||||||||| |||||| ||||    
T  33051178 ggctcagaaaaatattgggtatgagaaaattatcagcat-tgaaacatgagagtggtgcatgactatctctatgactcatcacagcc 33051093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 9048160 - 9048106
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  9048160 tttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaactgcag 9048106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 32223501 - 32223555
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| |||||||||||||| | |||||||||||    
T  32223501 tttgaagtttcctcggcagttaactaccgaagttttcctcggtggttaactgcag 32223555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 9049083 - 9049126
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  9049083 ctcggcagttaactaccgaagttttcctcggtagttaactgcag 9049126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 11157810 - 11157771
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaact 379  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  11157810 ctcggcagttaactatcgaagttttcctcgacagttaact 11157771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 17596961 - 17596908
Alignment:
Q  361 ttttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||  |||||||    
T  17596961 ttttcctcgacagttaactgcagagggggtattttggtattttactggtgtttc 17596908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 8193208 - 8193251
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  8193208 ctcggcagttaactgtcgaagttttcctcggcagttaactgcag 8193251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 11840249 - 11840292
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  11840249 ctcggcagttaactaccgaggttttcctcgacagttaactgcag 11840292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 13388707 - 13388750
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  13388707 ctcggcagttaactaccgaggttttcctcgacagttaactgcag 13388750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 31146447 - 31146404
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  31146447 ctcggcagttaactaccgatgttttcctcgacagttaactgcag 31146404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 19757345 - 19757303
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||    
T  19757345 tcggtagttaactaccgaagtttttctcgatagttaactgcag 19757303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 32222614 - 32222560
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| |||||  |||||||| |||||||||||||  |||||||||||||    
T  32222614 tttgaagtttcctcggttgttaactaccgaagttttcctcagtagttaactgcag 32222560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 405
Target Start/End: Complemental strand, 35241931 - 35241889
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttac 405  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||    
T  35241931 ttcctcgacagttaactgcagagggggtattttggtattttac 35241889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 3380848 - 3380803
Alignment:
Q  336 ttttctcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||| |||||||| |||| |||||||||| |||||||||||    
T  3380848 ttttctcggtagttaactgtcgaggttttcctcggtagttaactgc 3380803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 383
Target Start/End: Original strand, 32643523 - 32643563
Alignment:
Q  343 ggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||| ||| ||||||||||| ||||||||||||    
T  32643523 ggcagttaactaccgaggttttcctcgacagttaactgcag 32643563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 35241993 - 35241953
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcg 369  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  35241993 tttgaagtttcctccgcagttaactaccgaagttttcctcg 35241953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 21406352 - 21406298
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  21406352 tttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaactgcag 21406298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 21800844 - 21800790
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  21800844 tttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaactgcag 21800790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 21406285 - 21406234
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||  ||||||||||||||||||||||||| |||||||| ||||||||    
T  21406285 ttcctcggcagttaactgcagaggggatattttggtattttactagtgtttc 21406234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 21800777 - 21800726
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||  ||||||||||||||||||||||||| |||||||| ||||||||    
T  21800777 ttcctcggcagttaactgcagaggggatattttggtattttactagtgtttc 21800726  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 38135664 - 38135715
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||  ||||||||||||||||||||||||||||||||||  |||||||    
T  38135664 ttcctcggcagttaactgcagaggggatattttgatattttactggtgtttc 38135715  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 21835167 - 21835221
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||| ||||| |||||||||||| || |||||||||||||| |||||||||||||    
T  21835167 tttgtagtttcctcggcagttaaataccgaagttttcctcggtagttaactgcag 21835221  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 40039684 - 40039726
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||||||| |||||||||| |||||||||||||    
T  40039684 tcggcagttaactatcgaggttttcctcggtagttaactgcag 40039726  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 44727493 - 44727547
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||  ||||||||| |||||||||||||| |||||||||||||    
T  44727493 tttgaagtttcctcgaaagttaactaccgaagttttcctcggtagttaactgcag 44727547  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 38134450 - 38134405
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagt 374  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||||    
T  38134450 tttgaattttcctcggcagttaactatcgaagttttcctcggtagt 38134405  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 22577741 - 22577697
Alignment:
Q  338 ttctcggcagttaactatcgaagttttcctcgatagttaactgca 382  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||||    
T  22577741 ttctcggcagttaactaccgaggttttcctcgacagttaactgca 22577697  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 24249558 - 24249518
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgc 381  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  24249558 tcggcagttaactgtcgaagttttcctcgaaagttaactgc 24249518  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 21835234 - 21835285
Alignment:
Q  363 ttcctcgatagttaactgcagaggggatattttgatattttacgagtgtttc 414  Q
    |||||||| | ||||||||||||||| ||||||| |||||||| ||||||||    
T  21835234 ttcctcgacatttaactgcagagggggtattttggtattttactagtgtttc 21835285  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 23512726 - 23512777
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactg 380  Q
    |||||||||| |||||||||||| |  |||||||||||||||||||| ||||    
T  23512726 tttgaagtttcctcggcagttaagtgccgaagttttcctcgatagtttactg 23512777  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 43262495 - 43262452
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||    
T  43262495 ctcggcagttaactaccgaagttttcctcggcagttaactgcag 43262452  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 32383205 - 32383247
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||| ||| |||||||||| |||||||||||||    
T  32383205 tcggcagttaactaccgaggttttcctcggtagttaactgcag 32383247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 32437160 - 32437202
Alignment:
Q  341 tcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||||||| ||| |||||||||| |||||||||||||    
T  32437160 tcggcagttaactaccgaggttttcctcggtagttaactgcag 32437202  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 45133274 - 45133315
Alignment:
Q  342 cggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||| | |||||||||||||| |||||||||||||    
T  45133274 cggcagttaacaaccgaagttttcctcggtagttaactgcag 45133315  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 30803279 - 30803315
Alignment:
Q  117 tcagagtggtgcatgactatctctatgattcatcata 153  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  30803279 tcagagtggttcatgactatatctatgattcatcata 30803315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 5345 - 5302
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||    
T  5345 ctcggcagttaactaccgaggttttcctcggtagttaactgcag 5302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 65392 - 65349
Alignment:
Q  340 ctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||    
T  65392 ctcggcagttaactgccgaagttttcctcgacagttaactgcag 65349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 68456 - 68409
Alignment:
Q  336 ttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||||||| |||| |||| |||||||||||||| |||||||||||||    
T  68456 ttttctcggtagtttactaccgaagttttcctcggtagttaactgcag 68409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1500 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1500
Description:

Target: scaffold1500; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 747 - 801
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    ||||| |||| ||||||||||||||| |||||||||||| | |||||||| ||||    
T  747 tttgacgtttcctcggcagttaactaccgaagttttcctaggtagttaacagcag 801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 232820 - 232874
Alignment:
Q  329 tttgaagttttctcggcagttaactatcgaagttttcctcgatagttaactgcag 383  Q
    |||||||||| ||||||||||||||| ||| ||||||||||  |||||| |||||    
T  232820 tttgaagtttcctcggcagttaactaccgaggttttcctcggcagttaattgcag 232874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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