View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0259_low_4 (Length: 425)
Name: NF0259_low_4
Description: NF0259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0259_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 373
Target Start/End: Original strand, 32896087 - 32896451
Alignment:
| Q |
9 |
atcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaaaggcagt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32896087 |
atcataggtggttttattgtcatcatgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatatcaagaccaaagttaaaaggcagt |
32896186 |
T |
|
| Q |
109 |
acaatagcggagacggagacgtagaagaatgcagaatatagcaagtatctttagctggtaaggtagcagagatgtacaatgtacatccaattgtgcatat |
208 |
Q |
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| T |
32896187 |
acaatagtggagacggagacgtagaagaatgcagaatatagcaagcatccttagctggtaaggtagcagagatgtacaatgtacatccaagtgtgcatat |
32896286 |
T |
|
| Q |
209 |
gataaaatttgcacaacttgaggatatgaggtttattctggctataatgtaaacgctttgtgtaaaacaaggcttcataaagtttgttttaagctacctg |
308 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896287 |
gataaaatttgcacaacttgaggatttgaggtttattctggctataatgtaaacgctttgtgtaaaacaaggcttcataaagtttgttttaagctacctg |
32896386 |
T |
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| Q |
309 |
ttttacaagacaaaagtttagtctagaccagaattatacaacctaggtggccatttagacaaatc |
373 |
Q |
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| T |
32896387 |
ttttacaagacaaaagtttagtctagaccagaattatacaacctaggtggccatttagacaaatc |
32896451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 32919519 - 32919604
Alignment:
| Q |
9 |
atcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaa |
94 |
Q |
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| T |
32919519 |
atcataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa |
32919604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 32885367 - 32885509
Alignment:
| Q |
9 |
atcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaaaggcagt |
108 |
Q |
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|||||||||| |||||||| ||||||||| | ||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
32885367 |
atcataggtgcatttattgtgatcatgggtttgtatctgttgctgtgggggaaagaaggtgacaaagaggttgatttcaagaccaaagttaaattgcagt |
32885466 |
T |
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| Q |
109 |
acaatagcggagacggagacgtagaagaatgcagaatatagca |
151 |
Q |
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| T |
32885467 |
acaaaaatggagaaggaggcttagaagaatgttgaatatagca |
32885509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 32885583 - 32885693
Alignment:
| Q |
265 |
tttgtgtaaaacaaggcttcataaagtttgttttaagctacctgttttacaagacaaaagtttagtctagaccagaattatacaacct-aggtggccatt |
363 |
Q |
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||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||| || ||||| | ||||||||| |
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| T |
32885583 |
tttgtgtaaaacaaggcttcacaaagtttgttttcagctactagttttacaagacaaaaatttagtctataccagaattttataacctaatgtggccatt |
32885682 |
T |
|
| Q |
364 |
tagacaaatca |
374 |
Q |
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||||||||||| |
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| T |
32885683 |
tagacaaatca |
32885693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 19503608 - 19503529
Alignment:
| Q |
22 |
ttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaa |
101 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||| |
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| T |
19503608 |
ttattgtcatcatgggactatacttgttactgtgggggaaagaaggtgacagagaggttgatttcaagaccaaaggtaaa |
19503529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 32935754 - 32935838
Alignment:
| Q |
10 |
tcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaa |
94 |
Q |
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||||||||| |||||||||||||||||| | |||||||| |||||||| |||||||||||||||||| ||||| | |||||||| |
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| T |
32935754 |
tcataggtgcatttattgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagagattgatttgaagaccaa |
32935838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 32953150 - 32953234
Alignment:
| Q |
12 |
ataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaag |
96 |
Q |
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||||||| ||||| |||||||||||| | |||||||| |||||||| |||||||||||||||| ||| ||| |||||||||||| |
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| T |
32953150 |
ataggtgcatttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggtcgatttcaagaccaaag |
32953234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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