View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0259_low_5 (Length: 378)

Name: NF0259_low_5
Description: NF0259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0259_low_5
NF0259_low_5
[»] chr5 (4 HSPs)
chr5 (30-129)||(1723081-1723176)
chr5 (206-308)||(1722861-1722963)
chr5 (240-296)||(36418285-36418341)
chr5 (237-296)||(13543489-13543548)
[»] chr8 (5 HSPs)
chr8 (30-95)||(10304456-10304521)
chr8 (248-296)||(30576340-30576388)
chr8 (237-296)||(40553144-40553203)
chr8 (206-239)||(5358718-5358751)
chr8 (240-296)||(9276663-9276719)
[»] chr3 (3 HSPs)
chr3 (248-296)||(21376755-21376803)
chr3 (237-296)||(31247304-31247363)
chr3 (206-237)||(4276271-4276302)
[»] chr1 (4 HSPs)
chr1 (240-296)||(49650746-49650802)
chr1 (262-299)||(27351257-27351294)
chr1 (240-296)||(10686377-10686433)
chr1 (240-296)||(27351431-27351487)
[»] chr7 (2 HSPs)
chr7 (206-237)||(1441399-1441430)
chr7 (206-237)||(27995197-27995228)
[»] chr4 (3 HSPs)
chr4 (258-296)||(8408747-8408785)
chr4 (248-296)||(19681377-19681425)
chr4 (248-296)||(52182055-52182103)
[»] scaffold0746 (1 HSPs)
scaffold0746 (206-239)||(490-523)
[»] scaffold0070 (1 HSPs)
scaffold0070 (248-296)||(28733-28781)
[»] chr6 (1 HSPs)
chr6 (240-296)||(10962919-10962975)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 1723176 - 1723081
Alignment:
Q  30 acatctgcctagttttctgcactagttaagaaagcatttttcttggtgaaatttaatgtgcttgattatactattttgcattgcatgccacccatacaac 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||||    
T  1723176 acatctgcctagttttctgcactagttaagaaagcatttttcttggtggaatttaatgtgcttgattata----tttgcattgcatgccacccatacaac 1723081  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 1722963 - 1722861
Alignment:
Q  206 gataaactatttcactgttacccctgctgtcaattgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaagataatggtc 305  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||| |||||| |  |||||||||| ||||||||    
T  1722963 gataaactatttcactgttacccctgctgtcaaatgatgctcatgtagccatcaagttgttgacttgaatcaaaatgctcccttttaaaaggtaatggtc 1722864  T
Q  306 ata 308  Q
    |||    
T  1722863 ata 1722861  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 36418341 - 36418285
Alignment:
Q  240 tgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||| ||||||||  |||||||||||||||||| |||| |||||||||||||||    
T  36418341 tgatgctgatgtagccgttaagttgttgacttgaatcaaaacgttgtcttttaaaag 36418285  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 13543548 - 13543489
Alignment:
Q  237 aattgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    |||||||| | ||||| ||  ||||||||||||||| || ||||||||||||||||||||    
T  13543548 aattgatgttgatgtaaccgttaagttgttgacttggatcaaaatgttgtcttttaaaag 13543489  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 10304456 - 10304521
Alignment:
Q  30 acatctgcctagttttctgcactagttaagaaagcatttttcttggtgaaatttaatgtgcttgat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  10304456 acatctgcctagctttctgcactagttaagaaagcatttttcttagtggaatttgatgtgcttgat 10304521  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 30576340 - 30576388
Alignment:
Q  248 atgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||||  |||||||||||||||||| ||||||||| ||||||||||    
T  30576340 atgtagccgttaagttgttgacttgaatcaaaatgttgccttttaaaag 30576388  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 40553203 - 40553144
Alignment:
Q  237 aattgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    |||||||| | || |||||  ||||||||||||||| || ||||||||||||||||||||    
T  40553203 aattgatgttgatatagccgttaagttgttgacttgtatcaaaatgttgtcttttaaaag 40553144  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 5358718 - 5358751
Alignment:
Q  206 gataaactatttcactgttacccctgctgtcaat 239  Q
    ||||||||||||| ||||||||||||||||||||    
T  5358718 gataaactatttcgctgttacccctgctgtcaat 5358751  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 9276663 - 9276719
Alignment:
Q  240 tgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||| ||||||||||  ||||||||||||||| || |||||| || ||||||||||    
T  9276663 tgatgttcatgtagcctttaagttgttgacttggatcaaaatgatgccttttaaaag 9276719  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 21376755 - 21376803
Alignment:
Q  248 atgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  21376755 atgtagccgttaagttgttgacttgaattaaaatgttgtcttttaaaag 21376803  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 31247304 - 31247363
Alignment:
Q  237 aattgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    |||||||||| ||||||||  ||||||||||||||| || |||| |||||||||||||||    
T  31247304 aattgatgctgatgtagccgttaagttgttgacttggatcaaaacgttgtcttttaaaag 31247363  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 4276271 - 4276302
Alignment:
Q  206 gataaactatttcactgttacccctgctgtca 237  Q
    ||||||||||||||||||||||||||||||||    
T  4276271 gataaactatttcactgttacccctgctgtca 4276302  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 49650746 - 49650802
Alignment:
Q  240 tgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||| ||||||||  ||||||||||| ||| || ||||||||||||||||||||    
T  49650746 tgatgctgatgtagccgttaagttgttgatttggatcaaaatgttgtcttttaaaag 49650802  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 27351257 - 27351294
Alignment:
Q  262 ttgttgacttgaattaaaatgttgtcttttaaaagata 299  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  27351257 ttgttgacttgaatcaaaatgttgccttttaaaagata 27351294  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 10686377 - 10686433
Alignment:
Q  240 tgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||| ||||||||  ||||||||||||||| || ||||| ||| ||||||||||    
T  10686377 tgatgctgatgtagccgttaagttgttgacttgtatcaaaatattgccttttaaaag 10686433  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 27351487 - 27351431
Alignment:
Q  240 tgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||| ||||||||  ||||||||||||||  || |||||||||| |||||||||    
T  27351487 tgatgctgatgtagccgttaagttgttgactttgatcaaaatgttgttttttaaaag 27351431  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 237
Target Start/End: Complemental strand, 1441430 - 1441399
Alignment:
Q  206 gataaactatttcactgttacccctgctgtca 237  Q
    ||||||||||||||||||||||||||||||||    
T  1441430 gataaactatttcactgttacccctgctgtca 1441399  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 27995197 - 27995228
Alignment:
Q  206 gataaactatttcactgttacccctgctgtca 237  Q
    ||||||||||||||||||||||||||||||||    
T  27995197 gataaactatttcactgttacccctgctgtca 27995228  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 8408785 - 8408747
Alignment:
Q  258 taagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  8408785 taagttgttgacttggatcaaaatgttgtcttttaaaag 8408747  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 19681377 - 19681425
Alignment:
Q  248 atgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||||  ||||||||||||||| || | ||||||||||||||||||    
T  19681377 atgtagccgttaagttgttgacttggatcataatgttgtcttttaaaag 19681425  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 52182103 - 52182055
Alignment:
Q  248 atgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||||  |||||||||||||| ||| |||||| |||||||||||||    
T  52182103 atgtagccgttaagttgttgacttaaatcaaaatgatgtcttttaaaag 52182055  T

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Target: scaffold0746 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 523 - 490
Alignment:
Q  206 gataaactatttcactgttacccctgctgtcaat 239  Q
    ||||||||||||||||||||||||||| ||||||    
T  523 gataaactatttcactgttacccctgccgtcaat 490  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 28733 - 28781
Alignment:
Q  248 atgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||||| ||||||||||||||| || | ||||||| ||||||||||    
T  28733 atgtagccattaagttgttgacttggatcacaatgttgccttttaaaag 28781  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 10962919 - 10962975
Alignment:
Q  240 tgatgctcatgtagccactaagttgttgacttgaattaaaatgttgtcttttaaaag 296  Q
    ||||||| ||||||||  ||||||||||||||| || |||||| ||| |||||||||    
T  10962919 tgatgctgatgtagccgttaagttgttgacttggatcaaaatgctgttttttaaaag 10962975  T

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