View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0259_low_7 (Length: 345)
Name: NF0259_low_7
Description: NF0259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0259_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 39695489 - 39695667
Alignment:
| Q |
76 |
tacattatactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgcttatagggattgctttttatttgagcactgcttta |
175 |
Q |
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| T |
39695489 |
tacattctactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgcttta |
39695588 |
T |
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| Q |
176 |
attgaccaggttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgt |
254 |
Q |
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| T |
39695589 |
attgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgt |
39695667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 39704398 - 39704576
Alignment:
| Q |
76 |
tacattatactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgcttatagggattgctttttatttgagcactgcttta |
175 |
Q |
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| T |
39704398 |
tacattctattatcaacaatttccacaatcacttaagatcacatcaactgcaatgatttcaatgcttataggtattgctttttatttgagcactgcttta |
39704497 |
T |
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| Q |
176 |
attgaccaggttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgt |
254 |
Q |
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| T |
39704498 |
attgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgt |
39704576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 39934624 - 39934446
Alignment:
| Q |
76 |
tacattatactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgcttatagggattgctttttatttgagcactgcttta |
175 |
Q |
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| T |
39934624 |
tacattctattatcaacaatttccacaatcacttaagagcacatcaactgcaatgatttcaatgcttataggaattgctttttacttgagcactgcttta |
39934525 |
T |
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| Q |
176 |
attgaccaggttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgt |
254 |
Q |
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| T |
39934524 |
attgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgt |
39934446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 39928977 - 39928799
Alignment:
| Q |
76 |
tacattatactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgcttatagggattgctttttatttgagcactgcttta |
175 |
Q |
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|||||| || || ||||||||||||||||| || |||| ||||||||| |||| | ||||||||||||||||| |||||||||| |||||| ||| ||| |
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| T |
39928977 |
tacattctattatcaacaatttccacaatcgctaaagagcacatcaactgcaacggtttcaatgcttataggggttgctttttacatgagcaatgcatta |
39928878 |
T |
|
| Q |
176 |
attgaccaggttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgt |
254 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| ||||||| |
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|
| T |
39928877 |
attgatcaagttcgtaggagtactgattggttacctgatgacataaatcatgggaagattgacaatgtgtactggatgt |
39928799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 4847143 - 4847209
Alignment:
| Q |
76 |
tacattatactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgctt |
142 |
Q |
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|||||| |||||| ||||||||||||||| | || || ||||||||| ||||||||||||||||| |
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| T |
4847143 |
tacattttactacaaacaatttccacaataatttttgagcacatcaactccaatgatttcaatgctt |
4847209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 38059126 - 38059050
Alignment:
| Q |
152 |
gctttttatttgagcactgctttaattgaccaggttcgtaggagtactgattggttacctgatgaaataaatcatgg |
228 |
Q |
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|||||| | ||||||||| ||||| ||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| |
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| T |
38059126 |
gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgg |
38059050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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