View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0260_high_1 (Length: 628)

Name: NF0260_high_1
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0260_high_1
NF0260_high_1
[»] chr5 (1 HSPs)
chr5 (1-628)||(11696050-11696677)


Alignment Details
Target: chr5 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Complemental strand, 11696677 - 11696050
Alignment:
Q  1 agcacattaacaagtgtgctttcttcaaccctacaccttccttcactactcattttcccaagaagcattacacattcattccacatttccacacaagcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11696677 agcacattaacaagtgtgctttcttcaaccctacaccttccttcactactcattttcccaagaagcattagacattcattccacatttccacacaagcat 11696578  T
Q  101 gagcaccaataatagcactccatgaagcaacactcttttcatccattccattaaacacatcacaagcattctttatctccccacacttaccatacatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696577 gagcaccaataatagcactccatgaagcaacactcttttcatccattccattaaacacatcacaagcattctttatctccccacacttaccatacatgtt 11696478  T
Q  201 gatcaaactattttgcacaatgacatcaccttcaagacccatcttaaaaacatgaccatgaacttgaattccttcatcgaccacgcctaataaagaacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696477 gatcaaactattttgcacaatgacatcaccttcaagacccatcttaaaaacatgaccatgaacttgaattccttcatcgaccacgcctaataaagaacaa 11696378  T
Q  301 gcctttaaaacaaaaggataagtgaatttatcaggctcaacacctctttcaatcatatcaacataaagcaacaaagcttcttctagtttcatgtcattaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696377 gcctttaaaacaaaaggataagtgaatttatcaggctcaacacctctttcaatcatatcaacataaagcaacaaagcttcttctagtttcatgtcattaa 11696278  T
Q  401 catttcctctaatcattgtgttatagtcaaaactactcggtccatcgatctgagtgaagattgaacaagcataatccatgctaccccattttgttagagc 500  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696277 catttcctctaatcattgtgttatagtcaaaactactcggttcatcgatctgagtgaagattgaacaagcataatccatgctaccccattttgttagagc 11696178  T
Q  501 acaagttgcaacaagattgctcatacaaaatgtatcaaagaaaataccacatttcaaaacatgggcatgaacttgcttaaattcttccatactattgcat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696177 acaagttgcaacaagattgctcatacaaaatgtatcaaagaaaataccacatttcaaaacatgggcatgaacttgcttaaattcttccatactattgcat 11696078  T
Q  601 cttttgagtaaacataaccatctttttt 628  Q
    ||||||||||||||||||||||||||||    
T  11696077 cttttgagtaaacataaccatctttttt 11696050  T

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