View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0260_high_12 (Length: 328)
Name: NF0260_high_12
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0260_high_12
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 319
Target Start/End: Complemental strand, 41795164 - 41794867
Alignment:
Q
22
catcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatattgtgagt
121
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
T
41795164
catcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgttgttcttgtctatattgtgagt
41795065
T
Q
122
gtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacagatagtgaa
221
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41795064
gtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacagatagtgaa
41794965
T
Q
222
atgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgtgtcagtgttgatatattttggcattttaatcgacacatattgtccat
319
Q
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
T
41794964
atgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgagtcagtgttgatatattttggaattttaatcgacacatattgtccat
41794867
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 319
Target Start/End: Complemental strand, 41760312 - 41760015
Alignment:
Q
22
catcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatattgtgagt
121
Q
||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||
T
41760312
catcatcactagaagaggcagaaaaagatttagttaaaccaacaaaaacaaggagaccattacaaaggaggaacatgctattcttgtctatgttgtgagt
41760213
T
Q
122
gtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacagatagtgaa
221
Q
|||||||||| |||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||
T
41760212
gtagagttgaaaagggagagtagagaaatataatttaaagtaatgaaggaaaacaaacaaggaagaaggtgaaaagatgaagcaaaacacagatagtgaa
41760113
T
Q
222
atgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgtgtcagtgttgatatattttggcattttaatcgacacatattgtccat
319
Q
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| | |||| | ||||||||||||||||
T
41760112
atgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacacatattgtccat
41760015
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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