View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_high_7 (Length: 449)
Name: NF0260_high_7
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 43 - 449
Target Start/End: Complemental strand, 11696456 - 11696050
Alignment:
| Q |
43 |
gacatcatcttcaagacccatcttaaaaacatgaccatgaacttgaattccttcatcgaccacgcctaataaagaacaagcctttaaaacaaaaggataa |
142 |
Q |
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| T |
11696456 |
gacatcaccttcaagacccatcttaaaaacatgaccatgaacttgaattccttcatcgaccacgcctaataaagaacaagcctttaaaacaaaaggataa |
11696357 |
T |
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| Q |
143 |
gtgaatttatcaggctcaacacctctttcaatcatatcaacataaagcaacaaagcttcttctagtttcatgtcattaacatttcctctaatcattgtgt |
242 |
Q |
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| T |
11696356 |
gtgaatttatcaggctcaacacctctttcaatcatatcaacataaagcaacaaagcttcttctagtttcatgtcattaacatttcctctaatcattgtgt |
11696257 |
T |
|
| Q |
243 |
tatagtcaaaactactcggtccatcgatctgagtgaagattgaacaagcataatccatgctaccccattttgttagagcacaagttgcaacaagattgct |
342 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696256 |
tatagtcaaaactactcggttcatcgatctgagtgaagattgaacaagcataatccatgctaccccattttgttagagcacaagttgcaacaagattgct |
11696157 |
T |
|
| Q |
343 |
catacaaaatgtatcaaagaaaataccacatttcaaaacatgggcatgaacttgcttaaattcttccatactattgcatcttttgagtaaacataaccat |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696156 |
catacaaaatgtatcaaagaaaataccacatttcaaaacatgggcatgaacttgcttaaattcttccatactattgcatcttttgagtaaacataaccat |
11696057 |
T |
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| Q |
443 |
ctttttt |
449 |
Q |
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| T |
11696056 |
ctttttt |
11696050 |
T |
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