View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0260_high_8 (Length: 445)
Name: NF0260_high_8
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 37697847 - 37697411
Alignment:
| Q |
1 |
ccttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697847 |
ccttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
37697748 |
T |
|
| Q |
101 |
acaacaatgattgctgcaacgacaaatggaagggtgtctcatgcgactcagaccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697747 |
acaacaatgactgctgcaacgacaaatggaagggtgtctcatgcgactcagaccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgt |
37697648 |
T |
|
| Q |
201 |
tccatttccaccctccatcactaacctccctttccttgacgacttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697647 |
tccatttccaccctccatcactaacctcccttttcttgacgatttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaa |
37697548 |
T |
|
| Q |
301 |
ctcaccaatcttgagtacctcaccctcagccataccataccagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcga |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37697547 |
ctcaccaatcttgattacctcaccctcagccataccataccagcatctccggcgagataccaaacactctttcaaatatgaaaaccctattacggatcga |
37697448 |
T |
|
| Q |
401 |
cttcaccaacaacaaactcactggtcccctctctgct |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37697447 |
cttcaccaacaacaaactcactggtcccctccctgct |
37697411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 38013234 - 38013669
Alignment:
| Q |
1 |
ccttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
100 |
Q |
| |
|
||||||| ||| ||||| ||||| | | |||||||| | || ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
38013234 |
ccttcacactcagaaaactgcaacccagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaa |
38013333 |
T |
|
| Q |
101 |
acaacaatgattgctgcaacgacaaatggaagggtgtctcatgcgactcag------------accgagtcgccaaccttggtctcgacgacctcaacct |
188 |
Q |
| |
|
|| ||| || ||||||||| |||||||||| |||||||||||| |||||| ||||||| | ||||||| |||||| |||| |||| |
|
|
| T |
38013334 |
ac-aca--gactgctgcaacaacaaatggaaaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacct |
38013430 |
T |
|
| Q |
189 |
ccctaaacctgttccatttccaccctccatcactaacctccctttccttgacgacttctctctctcccgcatccccaacctcgtcggcacta---tccca |
285 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
38013431 |
acctaaacctgttccaattccaccctccatcgctaacctccctttccttaccttactctctctctcccacatccccaaccttgtcggcactatcctccca |
38013530 |
T |
|
| Q |
286 |
ccgtccatctccaaactcaccaatcttgagtacctcaccctcagccataccataccagcatctccggcgagataccaaacactctttcaaagatgaaaac |
385 |
Q |
| |
|
|||||||||| |||||||| || ||| |||||||||||||||| |||| |||| |||||||||||||||||||||||| || ||| |||| ||||| |
|
|
| T |
38013531 |
ccgtccatcttcaaactca--aaacttaagtacctcaccctcag--atac---accaacatctccggcgagataccaaacaccctctcacagatcaaaac |
38013623 |
T |
|
| Q |
386 |
cctattacggatcgacttcaccaacaacaaactcactggtcccctc |
431 |
Q |
| |
|
|| ||||| ||||||||| |||||||||||| |||||||||||| |
|
|
| T |
38013624 |
gctcttacgcatcgacttctacaacaacaaactaactggtcccctc |
38013669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 37993707 - 37993802
Alignment:
| Q |
1 |
ccttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggat |
96 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||| || || | | |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37993707 |
ccttcactctcagaacaatgcaatccacatgacaaaaaaaccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggat |
37993802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 431
Target Start/End: Original strand, 37994043 - 37994135
Alignment:
| Q |
339 |
accagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctc |
431 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| |||| ||||||||| || |||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
37994043 |
accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaaccatcgacatcagcgacaacaaactcactggtcccctc |
37994135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 37989519 - 37989616
Alignment:
| Q |
3 |
ttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
100 |
Q |
| |
|
||||| ||| ||||| ||||| | | |||||||| | || |||||||||| || ||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
37989519 |
ttcacactcagaaaactgcaacccagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaa |
37989616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 389
Target Start/End: Original strand, 25326162 - 25326518
Alignment:
| Q |
34 |
aaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagg |
133 |
Q |
| |
|
||||||||| |||| |||| ||||||||| | |||| |||||||||||| ||||||||| | |||| |||| ||| ||||||| | |||||||| | | |
|
|
| T |
25326162 |
aaagaagccctactgaaaattaaaaaagaactaggcagcccaaccaaactttcttcatggaacccaa-caac--tgactgctgcagccacaaatgggaag |
25326258 |
T |
|
| Q |
134 |
gtgtctcatgcgactcaga------ccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccat---cactaa |
224 |
Q |
| |
|
||||| |||||||||| | ||| ||| ||| |||| |||| ||||||||||||||| |||| |||| | ||||||||||||| |||||| |
|
|
| T |
25326259 |
gtgtcctatgcgactcacaaacctaccgtgtcaacaagcttgatctcttcgacctcaacctccccaaacacgttcaaattccaccctccatattcactaa |
25326358 |
T |
|
| Q |
225 |
cctccctttccttgacgacttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgagtacctcacc |
324 |
Q |
| |
|
|||||||||| | || ||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||| | |
|
|
| T |
25326359 |
cctccctttcataaactttctctctatcgacaacatccccaacctcgttggcactatcccgccttccatctccaaactcaccaaacttgaggtcctcatc |
25326458 |
T |
|
| Q |
325 |
ctcagccataccataccagcatctccggcgagataccaaacactctttcaaagatgaaaacccta |
389 |
Q |
| |
|
|||| | || |||||||||||||||||||||||| | || ||| |||| ||||||||| |
|
|
| T |
25326459 |
atcag-----cggcacaagcatctccggcgagataccaaactcactctcacagattaaaacccta |
25326518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 286 times since January 2019
Visitors: 2563