View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0260_low_1 (Length: 628)
Name: NF0260_low_1
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Complemental strand, 11696677 - 11696050
Alignment:
| Q |
1 |
agcacattaacaagtgtgctttcttcaaccctacaccttccttcactactcattttcccaagaagcattacacattcattccacatttccacacaagcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11696677 |
agcacattaacaagtgtgctttcttcaaccctacaccttccttcactactcattttcccaagaagcattagacattcattccacatttccacacaagcat |
11696578 |
T |
|
| Q |
101 |
gagcaccaataatagcactccatgaagcaacactcttttcatccattccattaaacacatcacaagcattctttatctccccacacttaccatacatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696577 |
gagcaccaataatagcactccatgaagcaacactcttttcatccattccattaaacacatcacaagcattctttatctccccacacttaccatacatgtt |
11696478 |
T |
|
| Q |
201 |
gatcaaactattttgcacaatgacatcaccttcaagacccatcttaaaaacatgaccatgaacttgaattccttcatcgaccacgcctaataaagaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696477 |
gatcaaactattttgcacaatgacatcaccttcaagacccatcttaaaaacatgaccatgaacttgaattccttcatcgaccacgcctaataaagaacaa |
11696378 |
T |
|
| Q |
301 |
gcctttaaaacaaaaggataagtgaatttatcaggctcaacacctctttcaatcatatcaacataaagcaacaaagcttcttctagtttcatgtcattaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696377 |
gcctttaaaacaaaaggataagtgaatttatcaggctcaacacctctttcaatcatatcaacataaagcaacaaagcttcttctagtttcatgtcattaa |
11696278 |
T |
|
| Q |
401 |
catttcctctaatcattgtgttatagtcaaaactactcggtccatcgatctgagtgaagattgaacaagcataatccatgctaccccattttgttagagc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696277 |
catttcctctaatcattgtgttatagtcaaaactactcggttcatcgatctgagtgaagattgaacaagcataatccatgctaccccattttgttagagc |
11696178 |
T |
|
| Q |
501 |
acaagttgcaacaagattgctcatacaaaatgtatcaaagaaaataccacatttcaaaacatgggcatgaacttgcttaaattcttccatactattgcat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696177 |
acaagttgcaacaagattgctcatacaaaatgtatcaaagaaaataccacatttcaaaacatgggcatgaacttgcttaaattcttccatactattgcat |
11696078 |
T |
|
| Q |
601 |
cttttgagtaaacataaccatctttttt |
628 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11696077 |
cttttgagtaaacataaccatctttttt |
11696050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 275 times since January 2019
Visitors: 2563