View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_10 (Length: 350)
Name: NF0260_low_10
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 194 - 350
Target Start/End: Complemental strand, 32425995 - 32425839
Alignment:
| Q |
194 |
ctttcgaataaaccatcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcac |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
32425995 |
ctttcgaataaaccatcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaacgcaaattcattaggaagaagggaaactagacacaagatcac |
32425896 |
T |
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| Q |
294 |
aataaaatctcattacttggtaaacataatataagtcctgcatgtctcggacgtaat |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32425895 |
aataaaatctcattacttggtaaacataatataaatcctgcatgtctcggacgtaat |
32425839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 32426133 - 32425982
Alignment:
| Q |
26 |
atcacaaagatgatgattataaatttctcacgactattcaactgaagtgtatcagataaatatannnnnnnactaataaactattatacttaatgaagta |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
32426133 |
atcacaaagatgatgattataaatttctcacgactattcaactgaagtgtatcagataaatatatttttttactaataaactatgatacttaatgaagta |
32426034 |
T |
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| Q |
126 |
tatcagacaattctgttttaataaactatgacacttaactttcgaataaacc |
177 |
Q |
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| T |
32426033 |
tatcagacaattctgttttaataaactatgacacttaactttcgaataaacc |
32425982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 1544316 - 1544180
Alignment:
| Q |
38 |
atgattataaatttctcacgactattcaactgaagtgtatcagataaatatannnnnnnactaataaactattatacttaatgaagtatatcagacaatt |
137 |
Q |
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||||| || |||||||||||||||||| || |||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |
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| T |
1544316 |
atgatcatgaatttctcacgactattcggcttaagtgtgtcagataaatatatttttt-actaataaactacgatacttaatgaagtgtatcagacaatt |
1544218 |
T |
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| Q |
138 |
ctgttttaataaactatgacacttaactttcgaataaacc |
177 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
1544217 |
ttgttttaataaac--tgacacttaactttcgaataaacc |
1544180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 310
Target Start/End: Complemental strand, 1544193 - 1544078
Alignment:
| Q |
194 |
ctttcgaataaaccatcaaaacaatgaacttcacaaat-gtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatca |
292 |
Q |
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||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||| |
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| T |
1544193 |
ctttcgaataaaccatcaaaataatgaacttcaaaaattgtaaacttcaatacccgaaacacaaattcattatgaagaagggaaactagacctaagat-- |
1544096 |
T |
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| Q |
293 |
caataaaatctcattact |
310 |
Q |
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| T |
1544095 |
ctataaaatctcattact |
1544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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