View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_12 (Length: 328)
Name: NF0260_low_12
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 319
Target Start/End: Complemental strand, 41795164 - 41794867
Alignment:
| Q |
22 |
catcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatattgtgagt |
121 |
Q |
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| T |
41795164 |
catcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgttgttcttgtctatattgtgagt |
41795065 |
T |
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| Q |
122 |
gtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacagatagtgaa |
221 |
Q |
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| T |
41795064 |
gtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacagatagtgaa |
41794965 |
T |
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| Q |
222 |
atgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgtgtcagtgttgatatattttggcattttaatcgacacatattgtccat |
319 |
Q |
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| T |
41794964 |
atgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgagtcagtgttgatatattttggaattttaatcgacacatattgtccat |
41794867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 319
Target Start/End: Complemental strand, 41760312 - 41760015
Alignment:
| Q |
22 |
catcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatattgtgagt |
121 |
Q |
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||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
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| T |
41760312 |
catcatcactagaagaggcagaaaaagatttagttaaaccaacaaaaacaaggagaccattacaaaggaggaacatgctattcttgtctatgttgtgagt |
41760213 |
T |
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| Q |
122 |
gtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacagatagtgaa |
221 |
Q |
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| T |
41760212 |
gtagagttgaaaagggagagtagagaaatataatttaaagtaatgaaggaaaacaaacaaggaagaaggtgaaaagatgaagcaaaacacagatagtgaa |
41760113 |
T |
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| Q |
222 |
atgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgtgtcagtgttgatatattttggcattttaatcgacacatattgtccat |
319 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| | |||| | |||||||||||||||| |
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| T |
41760112 |
atgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacacatattgtccat |
41760015 |
T |
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