View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0260_low_15 (Length: 323)

Name: NF0260_low_15
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0260_low_15
NF0260_low_15
[»] chr5 (7 HSPs)
chr5 (1-301)||(38816449-38816749)
chr5 (3-101)||(22423764-22423864)
chr5 (54-103)||(8420075-8420124)
chr5 (233-274)||(38821887-38821928)
chr5 (49-101)||(9929668-9929720)
chr5 (73-103)||(24906250-24906280)
chr5 (124-162)||(35665559-35665597)
[»] chr1 (1 HSPs)
chr1 (48-101)||(48547938-48547991)
[»] chr6 (6 HSPs)
chr6 (2-101)||(8805524-8805625)
chr6 (54-101)||(426478-426525)
chr6 (54-101)||(5732474-5732521)
chr6 (1-69)||(10294112-10294181)
chr6 (73-103)||(34073276-34073306)
chr6 (60-101)||(2117134-2117175)
[»] scaffold0168 (3 HSPs)
scaffold0168 (40-101)||(21217-21278)
scaffold0168 (40-101)||(21088-21149)
scaffold0168 (40-101)||(21346-21407)
[»] chr7 (5 HSPs)
chr7 (4-101)||(11700811-11700909)
chr7 (3-69)||(9933282-9933347)
chr7 (1-71)||(29787354-29787423)
chr7 (73-102)||(17852091-17852120)
chr7 (73-101)||(15680900-15680928)
[»] chr2 (6 HSPs)
chr2 (54-101)||(19536361-19536408)
chr2 (54-101)||(19574031-19574078)
chr2 (54-100)||(18255945-18255991)
chr2 (54-100)||(34691770-34691816)
chr2 (54-100)||(34714182-34714228)
chr2 (65-101)||(42511322-42511358)
[»] chr3 (5 HSPs)
chr3 (65-103)||(4466538-4466576)
chr3 (73-103)||(5440965-5440995)
chr3 (65-103)||(13807237-13807275)
chr3 (1-71)||(8039818-8039889)
chr3 (65-101)||(27505334-27505370)
[»] scaffold0450 (1 HSPs)
scaffold0450 (73-101)||(8564-8592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (55-103)||(46731-46778)
[»] chr4 (2 HSPs)
chr4 (57-101)||(18844423-18844467)
chr4 (65-101)||(28470448-28470484)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 38816749 - 38816449
Alignment:
Q  1 cgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38816749 cgctaataatttgagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcata 38816650  T
Q  101 gttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggagata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38816649 gttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggagata 38816550  T
Q  201 tttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaatgatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38816549 tttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatg 38816450  T
Q  301 a 301  Q
    |    
T  38816449 a 38816449  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 22423864 - 22423764
Alignment:
Q  3 ctaataatttgagaaaatcgctatatttcattataattatgt--gtcggtgtggtgtcggtgtc-ggacatggctaattcgaggagtgtccgtgcttcat 99  Q
    ||||||||||||||||||| | ||| |||| ||||||||| |  |||||||| ||||||||||| ||||| | ||||| |||||||||||||||||||||    
T  22423864 ctaataatttgagaaaatcac-ataattcaatataattatatatgtcggtgtcgtgtcggtgtctggacacgcctaatccgaggagtgtccgtgcttcat 22423766  T
Q  100 ag 101  Q
    ||    
T  22423765 ag 22423764  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  54 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 103  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 38821928 - 38821887
Alignment:
Q  233 tgttgtgtgttcaggtgaagatttgagtgatcttgctgtgga 274  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  38821928 tgttgtgtgtccaggtgaagatttgagcgatcttgctgtgga 38821887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  49 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  73 ctaattcgaggagtgtccgtgcttcatagtt 103  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
Q  124 tgttggagactgacatctgttggacactggacacacctt 162  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35665597 tgttggaaactgacatgtgttggacactggacacacctt 35665559  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  48 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 8805625 - 8805524
Alignment:
Q  2 gctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt---gtcggacatggctaattcgaggagtgtccgtgcttca 98  Q
    |||||||||||||||||||| | ||| || | | ||||||||||||||||| ||||| |    || ||||||| ||||| ||||||||||||||||||||    
T  8805625 gctaataatttgagaaaatcac-ataatttagtgtaattatgtgtcggtgtagtgtcagacacgtgggacatgcctaatccgaggagtgtccgtgcttca 8805527  T
Q  99 tag 101  Q
    |||    
T  8805526 tag 8805524  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  54 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 5732521 - 5732474
Alignment:
Q  54 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  5732521 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10294112 - 10294181
Alignment:
Q  1 cgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggaca 69  Q
    |||||||||||||||| |||||| |||||||| | |||||||  |||||||||| |||| |||||||||||    
T  10294112 cgctaataatttgagataatcgc-atatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggaca 10294181  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  73 ctaattcgaggagtgtccgtgcttcatagtt 103  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  60 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  40 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

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Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 21088 - 21149
Alignment:
Q  40 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21088 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

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Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  40 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 11700811 - 11700909
Alignment:
Q  4 taataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||||||||| |||||| | ||| |||| | |||||||||||| |||| || ||||||||||  ||| ||||||| |||||||||||| || |||||||    
T  11700811 taataatttgacaaaatcac-ataattcaatgtaattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgtccctgattcatag 11700909  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 9933282 - 9933347
Alignment:
Q  3 ctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 69  Q
    |||||||||||| |||||| | |||||||| || | ||||||||| |||| ||||||||||||||||    
T  9933282 ctaataatttgaaaaaatcac-atatttcagtaaacttatgtgtcagtgtcgtgtcggtgtcggaca 9933347  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29787423 - 29787354
Alignment:
Q  1 cgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatg 71  Q
    ||||||||||||||||||||| | ||| |||| | ||||||||||| |||||  ||||||||| |||||||    
T  29787423 cgctaataatttgagaaaatcac-ataattcagtgtaattatgtgttggtgtaatgtcggtgttggacatg 29787354  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  73 ctaattcgaggagtgtccgtgcttcatagt 102  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  73 ctaattcgaggagtgtccgtgcttcatag 101  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  54 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  54 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  54 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 100  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  54 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 100  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  54 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 100  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  65 ggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  65 ggacatggctaattcgaggagtgtccgtgcttcatagtt 103  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  73 ctaattcgaggagtgtccgtgcttcatagtt 103  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  65 ggacatggctaattcgaggagtgtccgtgcttcatagtt 103  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8039889 - 8039818
Alignment:
Q  1 cgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggacatg 71  Q
    ||||||||||||||||||||   |||| |||| | ||||  ||||||||||||| ||||||||||||||||||    
T  8039889 cgctaataatttgagaaaat-tatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatg 8039818  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  65 ggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  73 ctaattcgaggagtgtccgtgcttcatag 101  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  55 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 103  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  57 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  65 ggacatggctaattcgaggagtgtccgtgcttcatag 101  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

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