View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_16 (Length: 322)
Name: NF0260_low_16
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 87 - 314
Target Start/End: Original strand, 44915187 - 44915414
Alignment:
| Q |
87 |
atttgcttctagtcagcaaggtatgaggttagtcgccaaggcacaacaatttgatacggaaagaatagacggtgcagggataaagggcaatttagaccca |
186 |
Q |
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| T |
44915187 |
atttgcttctagtcagcaaggcatgaggttagtcgccaaggcacaacaatttgatacagaaagaatagatggtgcagggataaagtgcaatttagaccca |
44915286 |
T |
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| Q |
187 |
caacaagtacggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacagacaacctcgaatagtcctcagttatctaatgggatat |
286 |
Q |
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| T |
44915287 |
caacaagtacggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacagacaacctcgaatagtcctcagttatctaatgggatat |
44915386 |
T |
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| Q |
287 |
tacctcactcgctaatgctattttcttc |
314 |
Q |
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| T |
44915387 |
tacctcactcgctaatgctattatcttc |
44915414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 7749019 - 7749111
Alignment:
| Q |
173 |
gcaatttagacccacaacaagtacggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacagacaacctcgaatagtc |
265 |
Q |
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| T |
7749019 |
gcaatttagacccacaacaattacggcttcagcaaagaatgccacaacatgcattcatgagatctaatttcccacagacaacctggaatagtc |
7749111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 7748903 - 7748986
Alignment:
| Q |
87 |
atttgcttctagtcagcaaggtatgaggttagtcgccaaggcacaacaatttgatacggaaagaatagacggtgcagggataaa |
170 |
Q |
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| T |
7748903 |
atttgcttctggtcagcaaggcatgaggttagttgccaaggaagaacaatttgaaatggaaagaatagatggtgcagggataaa |
7748986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 2338946 - 2338999
Alignment:
| Q |
197 |
ggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacaga |
250 |
Q |
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| T |
2338946 |
ggcttcagcaaagaatgccacaacatgcatccatgagacctaatttcccacaga |
2338999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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