View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_17 (Length: 319)
Name: NF0260_low_17
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 55070844 - 55071122
Alignment:
| Q |
30 |
aagaatatattaattcctcattaagtctaatttctaatactaaaccatagttgtttccttagtcacatgcatcaataggttaaaactaatacatctttct |
129 |
Q |
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| T |
55070844 |
aagaatatattaattcctcattaagtctaatttctaatactaaaccatagttgtttccttactcacatgcatcaataggttaaaactagtacatctttct |
55070943 |
T |
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| Q |
130 |
tattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattacatagttatgaccaggcgcc |
229 |
Q |
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| T |
55070944 |
tattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattacatagttatgaccaggcgcc |
55071043 |
T |
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| Q |
230 |
actcaaaagttttttggtatcttgaacgacgcgacattccaagatataaacttccttctcttgaagaaaccggcttcat |
308 |
Q |
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| T |
55071044 |
tctcaaaagttttttggtatcttgaacgacgcgacattccaagatataaacttccttctcttgaagaaaccggcttcat |
55071122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 252
Target Start/End: Complemental strand, 49701988 - 49701861
Alignment:
| Q |
125 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattacatagttatgaccag |
224 |
Q |
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| T |
49701988 |
tttcttatcattaggttctgccatctttgagagaaaagaaagatgaacttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaa |
49701889 |
T |
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| Q |
225 |
gcgccactcaaaagttttttggtatctt |
252 |
Q |
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| T |
49701888 |
gctcctctcaagaatttttcgttatctt |
49701861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 49485481 - 49485352
Alignment:
| Q |
125 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattacatagttatgaccag |
224 |
Q |
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| T |
49485481 |
tttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgaccaa |
49485382 |
T |
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| Q |
225 |
gcgccactcaaaagttttttggtatcttga |
254 |
Q |
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| T |
49485381 |
gctcctctcaagaattttttgttatcttga |
49485352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 49532181 - 49532102
Alignment:
| Q |
125 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtca |
204 |
Q |
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| T |
49532181 |
tttcttatcactaggttctgccatcgttgagaggaaagaaagatgaacttttgttgagagaactgctcggaagatggtca |
49532102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 49521174 - 49521121
Alignment:
| Q |
136 |
taggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactg |
189 |
Q |
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| T |
49521174 |
taggttctgccatcattgagaggaaagaaagatgaacttttgttgagagaactg |
49521121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 55066630 - 55066715
Alignment:
| Q |
125 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattaca |
211 |
Q |
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| T |
55066630 |
tttcttattaataggt-cttccatctctgcaagaaaagcaagatgaacctttgttgagagaactgttcagaagatggtcaaattaca |
55066715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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