View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_18 (Length: 310)
Name: NF0260_low_18
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 84 - 310
Target Start/End: Complemental strand, 11696966 - 11696740
Alignment:
| Q |
84 |
gacatcatcatctggtgccaaaccttcttcaatcatttctgagaaaactttaagagcttccttaccacgtccatgaatcgcaagaccagatatcattaca |
183 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696966 |
gacaacatcatctggtgccaaaccttcttcaatcatttctgagaaaactttaagagcttccttaccacgtccatgaatcgcaagaccagatatcattaca |
11696867 |
T |
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| Q |
184 |
gtgtaagaaaatctattcttctccgacatattctcgaatacgcgtaaacctttctcaagacatccacacttgacatacatatcaattaacgaagtcttca |
283 |
Q |
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||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11696866 |
gtgtaagaatatctattcttctccgacatatttttgaatacgcgtaaacctttctcaagacatccactcttgacatacatatcaattaacgaagtcttca |
11696767 |
T |
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| Q |
284 |
caacaacattgagttcactaatgttcc |
310 |
Q |
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||||||||||||||||||||||||||| |
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| T |
11696766 |
caacaacattgagttcactaatgttcc |
11696740 |
T |
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