View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_2 (Length: 559)
Name: NF0260_low_2
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 89 - 559
Target Start/End: Complemental strand, 11696520 - 11696050
Alignment:
| Q |
89 |
catcacaagcattctttatctccccacacttaccatacatgttgatcaaactattttgcacaatgacatcaccttcaagacccatcttaaaaacatgacc |
188 |
Q |
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| T |
11696520 |
catcacaagcattctttatctccccacacttaccatacatgttgatcaaactattttgcacaatgacatcaccttcaagacccatcttaaaaacatgacc |
11696421 |
T |
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| Q |
189 |
atgaacttgaattccttcatcgaccacgcctaataaagaacaagcctttaaaacaaaaggataagtgaatttatcaggctcaacacctctttcaatcata |
288 |
Q |
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| T |
11696420 |
atgaacttgaattccttcatcgaccacgcctaataaagaacaagcctttaaaacaaaaggataagtgaatttatcaggctcaacacctctttcaatcata |
11696321 |
T |
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| Q |
289 |
tcaacataaagcaacaaagcttcttctagtttcatgtcattaacatttcctctaatcattgtgttatagtcaaaactactcggtccatcgatctgagtga |
388 |
Q |
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| T |
11696320 |
tcaacataaagcaacaaagcttcttctagtttcatgtcattaacatttcctctaatcattgtgttatagtcaaaactactcggttcatcgatctgagtga |
11696221 |
T |
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| Q |
389 |
agattgaacaagcataatccatgctaccccattttgttagagcacaagttgcaacaagattgctcatacaaaatgtatcaaagaaaataccacatttcaa |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696220 |
agattgaacaagcataatccatgctaccccattttgttagagcacaagttgcaacaagattgctcatacaaaatgtatcaaagaaaataccacatttcaa |
11696121 |
T |
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| Q |
489 |
aacatgggcatgaacttgcttaaattcttccatactattgcatcttttgagtaaacataaccatctttttt |
559 |
Q |
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| T |
11696120 |
aacatgggcatgaacttgcttaaattcttccatactattgcatcttttgagtaaacataaccatctttttt |
11696050 |
T |
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