View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_28 (Length: 266)
Name: NF0260_low_28
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 37704463 - 37704603
Alignment:
| Q |
1 |
gttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaaca |
100 |
Q |
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| T |
37704463 |
gttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaaca |
37704562 |
T |
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| Q |
101 |
atattaattcagtaaccatcatagaaaagtttggtgttcat |
141 |
Q |
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| T |
37704563 |
atattaattcagtaaccatcatagaaaagtttggtgttcat |
37704603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 37698983 - 37699124
Alignment:
| Q |
2 |
ttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaac |
99 |
Q |
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|||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
37698983 |
ttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaac |
37699082 |
T |
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| Q |
100 |
aatattaattcagtaaccatcatagaaaagtttggtgttcat |
141 |
Q |
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| T |
37699083 |
aatattaattcagtaacaatcatagaaaagtttggtgttcat |
37699124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 37437531 - 37437668
Alignment:
| Q |
3 |
tgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaat |
102 |
Q |
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| T |
37437531 |
tgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaattggcaacaat |
37437629 |
T |
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| Q |
103 |
attaattcagtaaccatcatagaaaagtttggtgttcat |
141 |
Q |
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||||||||| |||| |||||||||||||||||||||||| |
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| T |
37437630 |
attaattcaataacaatcatagaaaagtttggtgttcat |
37437668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 37698646 - 37698697
Alignment:
| Q |
2 |
ttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
53 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
37698646 |
ttgacttattagattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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