View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_3 (Length: 518)
Name: NF0260_low_3
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 40 - 345
Target Start/End: Complemental strand, 32426288 - 32425982
Alignment:
| Q |
40 |
agaacctgtgttaattgtcgggatcaaactttgaatctctttcatattaatcaacgaccatgatctgtacacannnnnnn-gaaaattttgtttacactt |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32426288 |
agaacctgtgttaattgtcgggatcaaactttgaatctctttcatattaatcaacgaccatgatctgtacacattttttttgaaaattttgtttacactt |
32426189 |
T |
|
| Q |
139 |
tcagttaagaaaatggaattaataatggttgacagttagacattccgtgagacaaatcacaaagatgatgattataaatttctcacgactattcaactga |
238 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426188 |
tcagttaagaaaatggaattaatcatggttgacagttagacattccgtaagacaaatcacaaagatgatgattataaatttctcacgactattcaactga |
32426089 |
T |
|
| Q |
239 |
agtgtatcagataaatatannnnnnnactaataaactattatacttaatgaagtatatcagacaattctgttttaataaactatgacacttaactttcga |
338 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426088 |
agtgtatcagataaatatatttttttactaataaactatgatacttaatgaagtatatcagacaattctgttttaataaactatgacacttaactttcga |
32425989 |
T |
|
| Q |
339 |
ataaacc |
345 |
Q |
| |
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||||||| |
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| T |
32425988 |
ataaacc |
32425982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 362 - 518
Target Start/End: Complemental strand, 32425995 - 32425839
Alignment:
| Q |
362 |
ctttcgaataaaccatcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcac |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
32425995 |
ctttcgaataaaccatcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaacgcaaattcattaggaagaagggaaactagacacaagatcac |
32425896 |
T |
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| Q |
462 |
aataaaatctcattacttggtaaacataatataagtcctgcatgtctcggacgtaat |
518 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32425895 |
aataaaatctcattacttggtaaacataatataaatcctgcatgtctcggacgtaat |
32425839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 178 - 345
Target Start/End: Complemental strand, 1544349 - 1544180
Alignment:
| Q |
178 |
acattccgtgagacaaatcacaaagatgat-----gattataaatttctcacgactattcaactgaagtgtatcagataaatatannnnnnnactaataa |
272 |
Q |
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|||||| || ||||||||||||||||| || ||| || |||||||||||||||||| || |||||| ||||||||||||| |||||||| |
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| T |
1544349 |
acattcagtaagacaaatcacaaagatcatatcatgatcatgaatttctcacgactattcggcttaagtgtgtcagataaatatatttttt-actaataa |
1544251 |
T |
|
| Q |
273 |
actattatacttaatgaagtatatcagacaattctgttttaataaactatgacacttaactttcgaataaacc |
345 |
Q |
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|||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
1544250 |
actacgatacttaatgaagtgtatcagacaattttgttttaataaac--tgacacttaactttcgaataaacc |
1544180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 362 - 478
Target Start/End: Complemental strand, 1544193 - 1544078
Alignment:
| Q |
362 |
ctttcgaataaaccatcaaaacaatgaacttcacaaat-gtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatca |
460 |
Q |
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||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||| |
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| T |
1544193 |
ctttcgaataaaccatcaaaataatgaacttcaaaaattgtaaacttcaatacccgaaacacaaattcattatgaagaagggaaactagacctaagat-- |
1544096 |
T |
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| Q |
461 |
caataaaatctcattact |
478 |
Q |
| |
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| |||||||||||||||| |
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|
| T |
1544095 |
ctataaaatctcattact |
1544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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