View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0260_low_32 (Length: 251)
Name: NF0260_low_32
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 8451134 - 8450921
Alignment:
| Q |
26 |
tcaaacataatatgatatatttagattattatcatggtgacctaattgacctaaaaaatttagaatatgtttcatggtcataataagatattgagccgaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8451134 |
tcaaacataatatgatatatttagattattatcatggtgacctaattgacctaaaaaatttagaatatgtttcatggtcataataagatattgagccgga |
8451035 |
T |
|
| Q |
126 |
tagaaataataaatacaatcatatcatatgtttaatgctcacatgacaacaaccaaataacattatgttgttctattatactttttccttaaatatgatt |
225 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8451034 |
taaaaataataaatacaatcatatcatatgtttaatgctcacatgacaacaaccaaataacattatgttgttctattatactttttccttaaatatgatt |
8450935 |
T |
|
| Q |
226 |
tgttctattatatt |
239 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8450934 |
tgttctattatatt |
8450921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 8428308 - 8428515
Alignment:
| Q |
28 |
aaacataatatgatatatttagattattatcatggtgacctaattgacctaaaaaatttagaatatgtttcatggtcataataagatattgagccgaata |
127 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8428308 |
aaacataatatgatacatttagatta---tcatggtgacctaattgacctaaaaaatttagaatatgtttcatggtcataataagatattgagccggata |
8428404 |
T |
|
| Q |
128 |
gaaataataaatacaatcatatcatatgtttaatgctcacatgacaacaaccaaataacattatgttgttctattatactttttccttaaatatgatttg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8428405 |
aaaataataaatacaatcatatcatatgtttaatgctcacatgacaacaaccaaataacattatgttgttctattatactttttccttaaatatgatttg |
8428504 |
T |
|
| Q |
228 |
ttctattatat |
238 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8428505 |
ttctatcatat |
8428515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 8437304 - 8437227
Alignment:
| Q |
135 |
taaatacaatcatatcatatgtttaatgctcacatgacaac-aaccaaataacattatgttgttctattatacttttt |
211 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||| ||| |||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
8437304 |
taaataaaatcatatcatatgtttgatactcacatgataaccaaccaaataacattattttgttcttttatatttttt |
8437227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 8481083 - 8481176
Alignment:
| Q |
108 |
ataagatattgagccgaatagaaataataaatacaatcatatcatatgtttaatgctcacatga-caacaaccaaataacattatgttgttcta |
200 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||||| ||||||| ||||| ||| |||||| | | |||||||||||||| ||||||||||| |
|
|
| T |
8481083 |
ataagatattgagccggattaaaatgataaatacaattatatcatgtgtttgatgttcacataattaccaaccaaataacatcatgttgttcta |
8481176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 8414094 - 8413996
Alignment:
| Q |
142 |
aatcatatcatatgtttaatgctcacatgacaa-caaccaaataacattatgttgttctattatactttttccttaaat-atgatttgttctattatatt |
239 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||| ||||||||||||| ||||||||||||| ||||| |||| || ||||||||||||||||| |
|
|
| T |
8414094 |
aatcatatcatatgtg-aatgctcacatgataatcaatcaaataacattattttgttctattatatttttttggtaaaacattatttgttctattatatt |
8413996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 8408771 - 8408700
Alignment:
| Q |
134 |
ataaatacaatcatatcatatgtttaatgctcacatgacaac-aaccaaataacattatgttgttctattata |
205 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | | ||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
8408771 |
ataaatacaatcatatcat-tgtttgatgctcacgtaataaccaaccaaataatattattttgttctattata |
8408700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8451172 - 8451140
Alignment:
| Q |
1 |
ctcaatatcagtatatattgtctcatcaaacat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8451172 |
ctcaatatcagtatatattgtctcatcaaacat |
8451140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 8350028 - 8349982
Alignment:
| Q |
108 |
ataagatattgagccgaatagaaataataaatacaatcatatcatat |
154 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||||||||||||||| |
|
|
| T |
8350028 |
ataagatattgagccggattaaaatgataaatacaatcatatcatat |
8349982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 211 times since January 2019
Visitors: 2563