View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_34 (Length: 248)
Name: NF0260_low_34
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 32425705 - 32425592
Alignment:
| Q |
113 |
gcagagacgtgtccagcttgatttggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcctaacccacacctcatga |
212 |
Q |
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| T |
32425705 |
gcagaggcgtgtccagcttgatttggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcctaacccacacctcatga |
32425606 |
T |
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| Q |
213 |
tacttaggatcata |
226 |
Q |
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|||||||||||||| |
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| T |
32425605 |
tacttaggatcata |
32425592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 32421347 - 32421305
Alignment:
| Q |
184 |
gagcattgttcctaacccacacctcatgatacttaggatcata |
226 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
32421347 |
gagcattgttcctaacccactcctcatgatacttgggatcata |
32421305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 1543672 - 1543630
Alignment:
| Q |
184 |
gagcattgttcctaacccacacctcatgatacttaggatcata |
226 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
1543672 |
gagcattgttcctaacccactcctcatgatacttgggatcata |
1543630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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