View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0260_low_4 (Length: 503)
Name: NF0260_low_4
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 30 - 494
Target Start/End: Complemental strand, 24059146 - 24058682
Alignment:
| Q |
30 |
gacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagt |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24059146 |
gacgctcctccaagcacttccaagccagctctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagt |
24059047 |
T |
|
| Q |
130 |
accctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaac |
229 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24059046 |
gccctttttatggcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaac |
24058947 |
T |
|
| Q |
230 |
accaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058946 |
accaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaa |
24058847 |
T |
|
| Q |
330 |
cgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatc |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24058846 |
cgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgtcttcacatc |
24058747 |
T |
|
| Q |
430 |
acggtgaattatgctttgtttagctccagtgtgaagataaagaagtcctttcgcagcccctatgc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24058746 |
acggtgaattatgctttgtttagctccagtgtgaagataaagaagtcctttcgcagccccgatgc |
24058682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 477
Target Start/End: Complemental strand, 14685434 - 14684987
Alignment:
| Q |
30 |
gacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| | |||||||||||||||||||| || |
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|
| T |
14685434 |
gacgctcctccaagcacttccaagccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaaaatgggtccatcatttcatgaaaggt |
14685335 |
T |
|
| Q |
130 |
accctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaac |
229 |
Q |
| |
|
||||||||||| ||| ||||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| |||| |
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|
| T |
14685334 |
accctttttatcgcaacttaatgcccacattgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaac |
14685235 |
T |
|
| Q |
230 |
accaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaa |
329 |
Q |
| |
|
||||| || || ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||| || ||||||||||||| ||||||| |
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|
| T |
14685234 |
accactccaaaagagaaaacatctgatttcttagttagaaatgtagtcctaaaatattcaggatcaacatagccaaaactaccctttacattcgttgtaa |
14685135 |
T |
|
| Q |
330 |
cgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatc |
429 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||| |
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|
| T |
14685134 |
cgtgactcttatcaagaattggaccctttttcgatatgccaaaatcagcaacttttggcacaagattttcgtccaagagaatgtttgctgtcttcacatc |
14685035 |
T |
|
| Q |
430 |
acggtgaattatgctttgtttagctccagtgtgaagataaagaagtcc |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
14685034 |
acggtgaattatgctttgtttagctccagtgtgaagatataaaagtcc |
14684987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 491
Target Start/End: Original strand, 14670879 - 14671340
Alignment:
| Q |
30 |
gacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagt |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| || |
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|
| T |
14670879 |
gacgctcctccaagcacttccatgccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggt |
14670978 |
T |
|
| Q |
130 |
accctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaac |
229 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| |||| |
|
|
| T |
14670979 |
accctttttatcgcaacttaatgcccacaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaac |
14671078 |
T |
|
| Q |
230 |
accaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaa |
329 |
Q |
| |
|
||||| || || ||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| || ||||||||||||| ||||||| |
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|
| T |
14671079 |
accactccaaaagagaaaacatctgatttcttagttagaaacttagtcctaaaatattcaggatcaacatagccaaaactaccctttacattagttgtaa |
14671178 |
T |
|
| Q |
330 |
cgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatc |
429 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || | || |
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|
| T |
14671179 |
cgtgactcttatcaagaataggaccctttttcgatatgccaaaatcagcaacttttggtacaagattttcgtccaagagaatgtttgttgtctttatgtc |
14671278 |
T |
|
| Q |
430 |
acggtgaattatgctttgtttagctccagtgtgaagataaagaagtcctttcgcagccccta |
491 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | |||||| || |||||||||| |
|
|
| T |
14671279 |
acggtgaattatgctttctttagctccagtgtgaagatataaaagtccctttgcagccccta |
14671340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 14705124 - 14704884
Alignment:
| Q |
30 |
gacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagt |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
14705124 |
gacgctcctccaagcacttccatgccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggt |
14705025 |
T |
|
| Q |
130 |
accctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaac |
229 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| |||| |
|
|
| T |
14705024 |
accctttttatcgcaacttaatgcccacaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaac |
14704925 |
T |
|
| Q |
230 |
accaccccgaacgagtaaacatctgatttcttagtaagaaa |
270 |
Q |
| |
|
||||| || | ||| ||||||||||||||||||| ||||| |
|
|
| T |
14704924 |
accactccataagagaaaacatctgatttcttagttagaaa |
14704884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 491
Target Start/End: Complemental strand, 30730941 - 30730480
Alignment:
| Q |
30 |
gacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagt |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
30730941 |
gacgctcctccaagcacttccatgccaactataaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggt |
30730842 |
T |
|
| Q |
130 |
accctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaac |
229 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| |||| |
|
|
| T |
30730841 |
accctttttatcgcaacttaatgcccgcaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaac |
30730742 |
T |
|
| Q |
230 |
accaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaa |
329 |
Q |
| |
|
||||| || || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||| |
|
|
| T |
30730741 |
accactccaaaagagaaaacatctgatttcttagttagaaatttagtcctaaaatattctggatcaacttagccaaaactaccctttacattagttgtaa |
30730642 |
T |
|
| Q |
330 |
cgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatc |
429 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||| || |
|
|
| T |
30730641 |
cgtgactcttatcaagaataggaccctttttcgatatgccaaaatcagaaacttttggcacaatctttttgtccaagagaatgtttgttgtcttcacgtc |
30730542 |
T |
|
| Q |
430 |
acggtgaattatgctttgtttagctccagtgtgaagataaagaagtcctttcgcagccccta |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||| |
|
|
| T |
30730541 |
acggtgaattatgctttgtttagctccagtgtgaagatataaaagtccctttgcagccccta |
30730480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 447
Target Start/End: Complemental strand, 33872813 - 33872733
Alignment:
| Q |
367 |
gccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttg |
447 |
Q |
| |
|
|||||| ||||||||||| | |||| ||| ||||| || ||||||||||| || || ||||| ||||||||||| ||||| |
|
|
| T |
33872813 |
gccaaagtcagcaactttagcaacaaagttatcatctaaaagaatgtttgtcgtctttacatctcggtgaattatactttg |
33872733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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