View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0260_low_5 (Length: 485)
Name: NF0260_low_5
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 73 - 463
Target Start/End: Complemental strand, 32425982 - 32425592
Alignment:
| Q |
73 |
catcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcacaataaaatctcat |
172 |
Q |
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| T |
32425982 |
catcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaacgcaaattcattaggaagaagggaaactagacacaagatcacaataaaatctcat |
32425883 |
T |
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| Q |
173 |
tacttggtaaacataatataaatcctgcatgtctcggacgtaattcaatattttatctacattggccaaaagaatttgtctggatcataatttcatgcag |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425882 |
tacttggtaaacataatataaatcctgcatgtctcggacgtaattcaatattttatctacattggccaaaagaatttgtctggatcataatttcatgcag |
32425783 |
T |
|
| Q |
273 |
catgtgttccaatcaggacgagagtctactgattatttgcccatcctgcatttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
32425782 |
catgtgttccaatcaggacgagagtctactgattatttgcccatcctgcatttggagaagcgtatccgccttgatttgcagaggcgtgtccagcttgatt |
32425683 |
T |
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| Q |
373 |
tggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcctaacccacacctcatgatacttaggatcata |
463 |
Q |
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| T |
32425682 |
tggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcctaacccacacctcatgatacttaggatcata |
32425592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 463
Target Start/End: Complemental strand, 32421347 - 32421305
Alignment:
| Q |
421 |
gagcattgttcctaacccacacctcatgatacttaggatcata |
463 |
Q |
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| T |
32421347 |
gagcattgttcctaacccactcctcatgatacttgggatcata |
32421305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 32421859 - 32421822
Alignment:
| Q |
292 |
gagagtctactgattatttgcccatcctgcatttggag |
329 |
Q |
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|||||||||||||||||||| |||||| |||||||||| |
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| T |
32421859 |
gagagtctactgattatttgaccatccagcatttggag |
32421822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 32421658 - 32421602
Alignment:
| Q |
322 |
atttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatttggagg |
378 |
Q |
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|||||||| || ||||||||| |||||| || ||||| |||||||||||||||||| |
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| T |
32421658 |
atttggaggggcgtatccgccttgatttggaggggcgtatccagcttgatttggagg |
32421602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 401
Target Start/End: Complemental strand, 32421687 - 32421603
Alignment:
| Q |
317 |
cctgcatttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatttggaggaacgtatccgccttaatttggag |
401 |
Q |
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| T |
32421687 |
cctgcatttggaggagcatatccaccttgatttggaggggcgtatccgccttgatttggaggggcgtatccagcttgatttggag |
32421603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 1544180 - 1544078
Alignment:
| Q |
73 |
catcaaaacaatgaacttcacaaat-gtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcacaataaaatctca |
171 |
Q |
| |
|
|||||||| ||||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||| | ||||||||||| |
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| T |
1544180 |
catcaaaataatgaacttcaaaaattgtaaacttcaatacccgaaacacaaattcattatgaagaagggaaactagacctaagat--ctataaaatctca |
1544083 |
T |
|
| Q |
172 |
ttact |
176 |
Q |
| |
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||||| |
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| T |
1544082 |
ttact |
1544078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 463
Target Start/End: Complemental strand, 1543672 - 1543630
Alignment:
| Q |
421 |
gagcattgttcctaacccacacctcatgatacttaggatcata |
463 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
1543672 |
gagcattgttcctaacccactcctcatgatacttgggatcata |
1543630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 1544071 - 1544026
Alignment:
| Q |
285 |
tcaggacgagagtctactgattatttgcccatcctgcatttggaga |
330 |
Q |
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||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
1544071 |
tcaggacgagagtctactgattatttgaccaaccagcatttggaga |
1544026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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