View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0260_low_6 (Length: 475)
Name: NF0260_low_6
Description: NF0260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0260_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 63 - 453
Target Start/End: Complemental strand, 32425982 - 32425592
Alignment:
| Q |
63 |
catcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcacaataaaatctcat |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32425982 |
catcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaacgcaaattcattaggaagaagggaaactagacacaagatcacaataaaatctcat |
32425883 |
T |
|
| Q |
163 |
tacttggtaaacataatataaatcctgcatgtctcggacgtaattcaatattttatctacattggccaaaagaatttgtctggatcataatttcatgcag |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32425882 |
tacttggtaaacataatataaatcctgcatgtctcggacgtaattcaatattttatctacattggccaaaagaatttgtctggatcataatttcatgcag |
32425783 |
T |
|
| Q |
263 |
catgtgttccaatcaggacgagagtctactgattatttgcccatcctgcatttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32425782 |
catgtgttccaatcaggacgagagtctactgattatttgcccatcctgcatttggagaagcgtatccgccttgatttgcagaggcgtgtccagcttgatt |
32425683 |
T |
|
| Q |
363 |
tggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcctaacccacacctcatgatacttaggatcata |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32425682 |
tggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcctaacccacacctcatgatacttaggatcata |
32425592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 453
Target Start/End: Complemental strand, 32421347 - 32421305
Alignment:
| Q |
411 |
gagcattgttcctaacccacacctcatgatacttaggatcata |
453 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
32421347 |
gagcattgttcctaacccactcctcatgatacttgggatcata |
32421305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 32421859 - 32421822
Alignment:
| Q |
282 |
gagagtctactgattatttgcccatcctgcatttggag |
319 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
32421859 |
gagagtctactgattatttgaccatccagcatttggag |
32421822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 32421658 - 32421602
Alignment:
| Q |
312 |
atttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatttggagg |
368 |
Q |
| |
|
|||||||| || ||||||||| |||||| || ||||| |||||||||||||||||| |
|
|
| T |
32421658 |
atttggaggggcgtatccgccttgatttggaggggcgtatccagcttgatttggagg |
32421602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 391
Target Start/End: Complemental strand, 32421687 - 32421603
Alignment:
| Q |
307 |
cctgcatttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatttggaggaacgtatccgccttaatttggag |
391 |
Q |
| |
|
||||||||||||| ||| ||||| ||| |||||| || ||||| ||| ||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
32421687 |
cctgcatttggaggagcatatccaccttgatttggaggggcgtatccgccttgatttggaggggcgtatccagcttgatttggag |
32421603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 1544180 - 1544078
Alignment:
| Q |
63 |
catcaaaacaatgaacttcacaaat-gtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcacaataaaatctca |
161 |
Q |
| |
|
|||||||| ||||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||| | ||||||||||| |
|
|
| T |
1544180 |
catcaaaataatgaacttcaaaaattgtaaacttcaatacccgaaacacaaattcattatgaagaagggaaactagacctaagat--ctataaaatctca |
1544083 |
T |
|
| Q |
162 |
ttact |
166 |
Q |
| |
|
||||| |
|
|
| T |
1544082 |
ttact |
1544078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 453
Target Start/End: Complemental strand, 1543672 - 1543630
Alignment:
| Q |
411 |
gagcattgttcctaacccacacctcatgatacttaggatcata |
453 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
1543672 |
gagcattgttcctaacccactcctcatgatacttgggatcata |
1543630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 1544071 - 1544026
Alignment:
| Q |
275 |
tcaggacgagagtctactgattatttgcccatcctgcatttggaga |
320 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
1544071 |
tcaggacgagagtctactgattatttgaccaaccagcatttggaga |
1544026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 341 times since January 2019
Visitors: 2564