View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261-INSERTION-13 (Length: 650)
Name: NF0261-INSERTION-13
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261-INSERTION-13 |
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Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 8 - 649
Target Start/End: Complemental strand, 52807686 - 52807042
Alignment:
| Q |
8 |
gttagggacattcaaatctgaaagagatgctgccatggcttacgacagcgccaccattaagctcagaagcagagaaagccatagaaactttgcatggaat |
107 |
Q |
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| T |
52807686 |
gttagggacattcaaatctgaaagagatgctgccatggcttacgacagcgccaccattaagctcagaagcagagaaagccatagaaactttgcatggaat |
52807587 |
T |
|
| Q |
108 |
aaccaaacagttgaagaacctatgtttcaaagtcaatataacatggaaacaattatgatcatgattagaaatggaacatacccctctaattttgcaacaa |
207 |
Q |
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| T |
52807586 |
aaccaaacagttcaagaacctatgtttcaaagtcaatatagcatggaaacaattatgatcatgattagaaatggaacatacccctctaattttgcaacaa |
52807487 |
T |
|
| Q |
208 |
catttcttagaaataatgaaag---ccaaggtgcaggcaaagaaggtgttgttataggggtgaagggtgaggaacaattttcttgcacacaactactttt |
304 |
Q |
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| T |
52807486 |
catttcttagaaataatgaaaggcgccaaggtgcaggcaaagaaggtgttgttataggggtgaaggatgaggaacaattttcttgcacacaactactttt |
52807387 |
T |
|
| Q |
305 |
tcaaaaagaattaacaccaagtgatgttggtaaactcaataggcttgtcgtcccgaaaaaacatgcagttacctattttcctttggtttgtggcaatgac |
404 |
Q |
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| T |
52807386 |
tcaaaaagaattaacaccaagtgatgttggtaaactcaataggcttgtcgtcccgaaaaaacatgcagttacctattttcctttggtttgtggcaatgac |
52807287 |
T |
|
| Q |
405 |
gtggaagttgtgttttatgacaaactcatgcgattgtggaagtttcgatattgctattggaagagcagccagagctatgtgttcactagaggatggaatc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807286 |
gtggaagttgtgttttatgacaaactcatgcgattgtggaagtttcgatattgctattggaagagcagccagagctatgtgttcactagaggatggaatc |
52807187 |
T |
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| Q |
505 |
ggtttgtgaaggataagaaattgaaggccaaagacaccattgtattttataggtgtgaacctataaatttgacaaataataacggagagagattgccgtt |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52807186 |
ggtttgtgaaggataagaaattgaaggccaaagacaccattgtattttataggtgtgaacctataaatttgacaaataataacggagagagactgccgtt |
52807087 |
T |
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| Q |
605 |
ttcattaattgatgtaatctacaatgatattaatggtaataataa |
649 |
Q |
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| T |
52807086 |
gtcattaattgatgtaatctacagtgatattgatggtaataataa |
52807042 |
T |
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