View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0261-INSERTION-15 (Length: 703)

Name: NF0261-INSERTION-15
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0261-INSERTION-15
NF0261-INSERTION-15
[»] chr7 (4 HSPs)
chr7 (274-450)||(38984496-38984671)
chr7 (237-450)||(10582923-10583134)
chr7 (327-450)||(356897-357020)
chr7 (171-219)||(5458591-5458639)
[»] chr3 (2 HSPs)
chr3 (459-688)||(6786671-6786885)
chr3 (17-90)||(6787213-6787286)
[»] chr1 (5 HSPs)
chr1 (328-450)||(16465528-16465650)
chr1 (359-450)||(50249155-50249246)
chr1 (171-219)||(16465686-16465734)
chr1 (119-164)||(16465777-16465822)
chr1 (274-331)||(50248348-50248405)
[»] chr4 (1 HSPs)
chr4 (281-347)||(6762552-6762618)
[»] chr5 (2 HSPs)
chr5 (381-454)||(1265396-1265469)
chr5 (119-164)||(1265276-1265321)
[»] chr6 (2 HSPs)
chr6 (119-164)||(9646155-9646200)
chr6 (119-164)||(9652172-9652217)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 4e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 274 - 450
Target Start/End: Complemental strand, 38984671 - 38984496
Alignment:
Q  274 gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc 373  Q
    |||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  38984671 gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc 38984572  T
Q  374 ctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatccgc 450  Q
    || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38984571 ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctctgaatccgc 38984496  T

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Target: chr7; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 237 - 450
Target Start/End: Complemental strand, 10583134 - 10582923
Alignment:
Q  237 tacttggcgatgtctttgggaaactctttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgc 336  Q
    ||||||| ||||||| |||||| ||| |||| | ||||||||||||  ||||||||||||||||  |||| ||| |||| |||||| || ||||  ||||    
T  10583134 tacttggtgatgtctatgggaacctcctttttagaatgagtttgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgc 10583037  T
Q  337 tgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatg 436  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||    
T  10583036 tgaaacccttttacacaggagcgaaggaagacattccctagacaactaaggttccaaaacttttggtttggaaatacccattttggaacgggtgatgatg 10582937  T
Q  437 ccctctgaatccgc 450  Q
    ||||||||||||||    
T  10582936 ccctctgaatccgc 10582923  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 327 - 450
Target Start/End: Complemental strand, 357020 - 356897
Alignment:
Q  327 tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacg 426  Q
    ||||| || ||||||||||||||||||||||| || ||||||||||||| || |||||| |||| ||||||||||| || |||||||||| |||||||||    
T  357020 ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacg 356921  T
Q  427 ggtgatgatgccctctgaatccgc 450  Q
    |||| |||||||||||||||||||    
T  356920 ggtgttgatgccctctgaatccgc 356897  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 5458591 - 5458639
Alignment:
Q  171 aacctaagctagctaaaacaaagagcaatcccaaaggcaatgagaaaac 219  Q
    ||||||| ||||| |||||||||| |||||||| |||||||||||||||    
T  5458591 aacctaaactagcaaaaacaaagaacaatcccataggcaatgagaaaac 5458639  T

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Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 459 - 688
Target Start/End: Complemental strand, 6786885 - 6786671
Alignment:
Q  459 cctacttgaaaatgaagaatgtcatgaaatg-ttttgaataattt-cattaattcggtacagaaattagagactctagaagttccatgcttgcaaaactt 556  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  6786885 cctacttgaaaatgaagaatgtcatgaaatggttttgaataattttcattgattcagtacagaaattagagactctagaagttccatgtttgcaaaactt 6786786  T
Q  557 atgatgatctatatttggcatataaacacaaatataacatagccagttgaaagtatcaacaagaaaaaccagataatttatgttaaaatatgacaaatat 656  Q
    ||||||||||               |||| ||||||||||||||||||||||| || || |||||||| ||||| ||||||||||||||||||||||||     
T  6786785 atgatgatct---------------acaccaatataacatagccagttgaaagcatgaataagaaaaa-cagatgatttatgttaaaatatgacaaataa 6786702  T
Q  657 tcatgtgacagaaggaaaggtgattattaagg 688  Q
    ||||||||| | |||||||||||||| |||||    
T  6786701 tcatgtgac-ggaggaaaggtgattaataagg 6786671  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 6787286 - 6787213
Alignment:
Q  17 cacatgggtcagaggacttttgtagagtggcaggcagtctatttttcaccataaatcaagaaatgaaagtgtgt 90  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  6787286 cacatgggtaagaggacttttgtcgagtggcaggcagtctattattcaccatacatcaacaaatgaaagtgtgt 6787213  T

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Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 328 - 450
Target Start/End: Complemental strand, 16465650 - 16465528
Alignment:
Q  328 ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgg 427  Q
    |||||||||||||||||||||| ||| || ||||||| ||||||  || | |||||||||||||||||||||||| |||||||||||||||||||||||     
T  16465650 ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaacga 16465551  T
Q  428 gtgatgatgccctctgaatccgc 450  Q
    |||||||||||||||||||||||    
T  16465550 gtgatgatgccctctgaatccgc 16465528  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 359 - 450
Target Start/End: Original strand, 50249155 - 50249246
Alignment:
Q  359 aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatccgc 450  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  50249155 aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctttgaatccgc 50249246  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 16465734 - 16465686
Alignment:
Q  171 aacctaagctagctaaaacaaagagcaatcccaaaggcaatgagaaaac 219  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16465734 aacctaagctagcaaaaacaaagagcaatcccaaaggcaatgagaaaac 16465686  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 16465822 - 16465777
Alignment:
Q  119 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa 164  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||    
T  16465822 gcttgaacccttatacagccagagtgcagaaaaaacacaaaagaaa 16465777  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
Q  274 gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt 331  Q
    |||||| |||||||||||| ||||||| ||||| |||||||| |||||  ||||||||    
T  50248348 gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt 50248405  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 6762552 - 6762618
Alignment:
Q  281 aattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttt 347  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  6762552 aattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaacccttt 6762618  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 1265396 - 1265469
Alignment:
Q  381 actaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatccgctgaa 454  Q
    |||| ||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||||||||||| ||||    
T  1265396 actacggttctaaaacttttggttttgtaatgccgtttttagaacgggtgatgatgccctctgaatccgttgaa 1265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 1265276 - 1265321
Alignment:
Q  119 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa 164  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||    
T  1265276 gcttgaacccttatacagccagagtgcaaaaactacacaaaagaaa 1265321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 9646155 - 9646200
Alignment:
Q  119 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa 164  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||    
T  9646155 gcttgaacccttatacagccaaagtgcaaaaattacacaaaagaaa 9646200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 9652172 - 9652217
Alignment:
Q  119 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa 164  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||    
T  9652172 gcttgaacccttatacagccaaagtgcaaaaattacacaaaagaaa 9652217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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